 |
Job Description | P0A9A6 | Confidence | 90.23% | Date | Thu Jan 5 11:09:46 GMT 2012 |
Rank | 121 | Aligned Residues | 75 |
% Identity | 20% | Template | c3gznB_ |
PDB info |
PDB header:protein binding/ligase | Chain: B: PDB Molecule:nedd8-activating enzyme e1 catalytic subunit; |
PDBTitle: structure of nedd8-activating enzyme in complex with nedd82 and mln4924
|
Resolution | 3.00 Å |
|
 |
  |   |
11 | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | |
. | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
| . |
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | V | I | K | V | I | G | V | G | G | G | G | G | N | A | V | E | H | M | V | R | E | R | I | E | G | V | E | F | F | A | V | N | T | . |
D | A | Q | A | L | R | K | T | A | V | G | Q | T | I | Q | I | G | S | G | I | T | K | G | L | G | A | G | A | N | P | E | V | G | R | N | A | A | D | E | D | R | D | A | L | R |
Query Conservation |   |
  |   |
|
|
|
|
|
|
|
|   |
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |
|
|
|
|
| . |
|   |
|   |
|   |   |   |   |
|   |   |
|
|   |
|
|   |   |   |
|   |
|   |
|
|
|   |   |
|
|   |
|   |   |
|
|   |
|   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|
|
|   |
|
|
|
|   |
|
|   |
|
|
|   |
|   |
|
|   |   |
|
|
|   |
|   |
|   |
|
|   |
|
|
|   |
|
|
|
|
|   |   |   |
|
|
|
|   |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |
|   |   |   |
|   |
Template Sequence |   |
C | K | V | L | V | I | G | A | G | G | L | G | C | E | L | L | K | N | L | A | L | S | G | F | R | Q | I | H | V | I | D | M | D | T | I | D | V | S | N | L | N | R | Q | F | L | F | R | P | K | D | I | G | R | P | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | E | V | A | A | E | F | L | N |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|
|  |  |  |  |  |
|
|
| B |
|
| G | G | G | G | G | T |
| T | T |
|
| G | G | G | T | T | S | B |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|  |  |
|  |  |  |
|
|
|
|  |  |
|
|  |  |  |
|
|
|  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 130 | . | . | . |
  |
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | A | L | E | G | A | D | M | V | F | I | A |
Query Conservation |   |
  |   |
|   |   |   |
|   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|   |
|   |
|   |   |   |   |
Template Sequence |   |
D | R | V | P | N | C | N | V | V | P | H | F |
Template Known Secondary structure |   |
 |  | S | T | T |
|  |  |  |  |  |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
134 | . | . | . | . | . | 140 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|