Job Description P0A9A6 Confidence 54.43% Date Thu Jan 5 11:09:46 GMT 2012 Rank 250 Aligned Residues 88 % Identity 18% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.						.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80
Predicted Secondary structure																		.	.	.	.	.																																																					.
Query SS confidence																		.	.	.	.	.																																																					.
Query Sequence		L	T	N	D	A	V	I	K	V	I	G	V	G	G	G	G	.	.	.	.	.	G	N	A	V	E	H	M	V	R	E	R	I	E	G	V	E	F	F	A	V	N	T	D	A	Q	A	L	R	K	T	A	V	G	Q	T	I	Q	I	G	S	G	I	T	K	G	L	G	A	G	A	N	P	.	E	V	G	R	N	A
Query Conservation																		.	.	.	.	.																																																					.
Alig confidence																		.	.	.	.	.												.																																									.
Template Conservation																																		.
Template Sequence		P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	.	L	K	P	A	L	I	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	V	K	E	G
Template Known Secondary structure		S	S	S										S	S	S	S	T	T															.									S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T
Template Predicted Secondary structure																																		.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.
Predicted Secondary structure																						.
Query SS confidence																						.
Query Sequence		A	D	E	D	R	D	A	L	R	A	A	L	E	G	A	D	M	V	F	I	.	A	A	G
Query Conservation																						.
Alig confidence			.	.	.	.	.	.	.	.												.
Template Conservation			.	.	.	.	.	.	.	.
Template Sequence		M	.	.	.	.	.	.	.	.	E	K	F	K	K	A	D	V	L	I	I	D	T	A	G
Template Known Secondary structure			.	.	.	.	.	.	.	.		T	T	S	S		S
Template Predicted Secondary structure			.	.	.	.	.	.	.	.
Template SS confidence
		176									.	.	.	180	.	.	.	.	.	.	.	.	.	190	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions