Job Description P0A9A6 Confidence 99.62% Date Thu Jan 5 11:09:46 GMT 2012 Rank 21 Aligned Residues 205 % Identity 20% Template c2p4nB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:tubulin beta chain; PDBTitle: human monomeric kinesin (1bg2) and bovine tubulin (1jff)2 docked into the 9-angstrom cryo-em map of nucleotide-free3 kinesin complexed to the microtubule Resolution 9.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.																																		.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		I	K	V	I	G	V	G	G	G	G	G	N	A	V	E	H	M	V	R	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	I	E	G	V	E	F	F	A	V	N	T	D	A	Q	A	L	R	K	T	A	V	G	Q	T	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		I	V	H	I	Q	A	G	Q	C	G	N	Q	I	G	A	K	F	W	E	V	I	S	D	E	H	G	I	D	P	T	G	S	Y	H	G	D	S	D	L	Q	L	E	R	I	N	V	Y	Y	N	E	A	A	G	N	K	Y	V	P	R	A	I	L	V	D	L	E	P	G	T	M	D	S	V	R	S	G	P	F	G	Q
Template Known Secondary structure		B						T	T																T	T	T	B		S	S			B			S	S	S	S	S	S	T	T	G	G	G	G			B	S	S	S	S		B									S									S	S	S	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
			58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.						.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.
Predicted Secondary structure		.																			.	.	.	.	.																								.	.	.																										.	.
Query SS confidence		.																			.	.	.	.	.																								.	.	.																										.	.
Query Sequence		.	I	Q	I	G	S	G	I	T	K	G	L	G	A	G	A	N	P	E	.	.	.	.	.	V	G	R	N	A	A	D	E	D	R	D	A	L	R	A	A	L	E	G	A	D	M	V	.	.	.	F	I	A	A	G	M	G	G	G	T	G	T	G	A	A	P	V	V	A	E	V	A	K	D	L	.	.	G	I	L
Query Conservation		.																			.	.	.	.	.																								.	.	.																										.	.
Alig confidence		.																			.	.	.	.	.																								.	.	.																										.	.
Template Conservation
Template Sequence		I	F	R	P	D	N	F	V	F	G	Q	S	G	A	G	N	N	W	A	K	G	H	Y	T	E	G	A	E	L	V	D	S	V	L	D	V	V	R	K	E	S	E	S	C	D	C	L	Q	G	F	Q	L	T	H	S	L	G	G	G	T	G	S	G	M	G	T	L	L	I	S	K	I	R	E	E	Y	P	D	R	I
Template Known Secondary structure		S	S		G	G	G						S				S		T	T						S																	T	S	S	S											S	S	S																			S	S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		127	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure											.	.																																														.
Query SS confidence											.	.																																														.
Query Sequence		T	V	A	V	V	T	K	P	F	.	.	N	F	E	G	K	K	R	M	A	F	A	E	Q	G	I	T	E	L	S	K	H	V	D	S	L	I	T	I	P	N	D	K	L	L	K	V	L	G	R	G	I	S	L	L	D	.	A	F	G	A	A	N	D	V	L	K	G	A	V	Q	G	I	A	E	L	I	T	R	P
Query Conservation											.	.																																														.
Alig confidence											.	.																																														.
Template Conservation
Template Sequence		M	N	T	F	S	V	V	P	S	P	K	V	S	D	T	V	V	E	P	Y	N	A	T	L	S	V	H	Q	L	V	E	N	T	D	E	T	Y	C	I	D	N	E	A	L	Y	D	I	C	F	R	T	L	K	L	T	T	P	T	Y	G	D	L	N	H	L	V	S	A	T	M	S	G	V	T	T	C	L	R	F	P
Template Known Secondary structure											S	S	S		S	S	S	S	T												T	T	S		S																T	S	S			S	S																						T	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	M	N	V	D	F	A	D	V	R	T	V	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	L	N	A	D	L	R	K	L	A	V	N	M
Template Known Secondary structure			T	B
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions