Job Description P0A9A6 Confidence 99.66% Date Thu Jan 5 11:09:46 GMT 2012 Rank 19 Aligned Residues 274 % Identity 13% Template c1z5wA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:tubulin gamma-1 chain; PDBTitle: crystal structure of gamma-tubulin bound to gtp Resolution 3.00 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30																										.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Query Sequence		D	A	V	I	K	V	I	G	V	G	G	G	G	G	N	A	V	E	H	M	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E	R	I	E	G	V	E	F	F	A	V	N	T	D	A	Q	A	L	R	K	T	A	V	.	G	Q	T	I	Q	I	G	S	G
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.
Template Conservation
Template Sequence		P	R	E	I	I	T	L	Q	L	G	Q	C	G	N	Q	I	G	F	E	F	W	K	Q	L	C	A	E	H	G	I	S	P	E	A	I	T	D	R	K	D	V	F	F	Y	Q	A	D	D	E	H	Y	I	P	R	A	V	L	L	D	L	E	P	R	V	I	H	S	I	L	N	S	P	Y	A	K	L	Y	N	P	E
Template Known Secondary structure																													T	T			S	S							T	T	T					T	T	S											S	S									T	S	T	T	T	T	T	S		G	G
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		64	.	.	.	.	.	70	.	.	.	.	.	.	.					.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.				.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																.	.	.	.																						.	.	.																										.	.
Query SS confidence																.	.	.	.																						.	.	.																										.	.
Query Sequence		I	T	K	G	L	G	A	G	A	N	P	E	V	G	.	.	.	.	R	N	A	A	D	E	D	R	D	A	L	R	A	A	L	E	G	A	D	M	V	.	.	.	F	I	A	A	G	M	G	G	G	T	G	T	G	A	A	P	V	V	A	E	V	A	K	D	L	.	.	G	I	L	T	V	A	V	V	T	K	P
Query Conservation																.	.	.	.																						.	.	.																										.	.
Alig confidence					.	.										.	.	.	.																						.	.	.																										.	.
Template Conservation					.	.
Template Sequence		N	I	Y	.	.	L	S	G	N	N	W	A	S	G	F	S	Q	G	E	K	I	H	E	D	I	F	D	I	I	D	R	E	A	D	G	S	D	S	L	E	G	F	V	L	C	H	S	I	A	G	G	T	G	S	G	L	G	S	Y	L	L	E	R	L	N	D	R	Y	P	K	K	L	V	Q	T	Y	S	V	F	P
Template Known Secondary structure		G			.	.					S																											S	S										S	S	T	T																	S	S	S	S
Template Predicted Secondary structure					.	.
Template SS confidence
		90	.	.			.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		F	N	F	E	G	K	K	R	M	A	F	A	E	Q	G	I	T	E	L	S	K	H	V	D	S	L	I	T	I	P	N	D	K	L	L	K	V	L	G	R	G	I	S	L	L	D	.	A	F	G	A	A	N	D	V	L	K	G	A	V	Q	G	I	A	E	L	I	T	R	P	G	L	M	N	V	D	F	A	D	V
Query Conservation																																																.
Alig confidence																																																.
Template Conservation
Template Sequence		N	Q	S	D	V	V	V	Q	P	Y	N	S	L	L	T	L	K	R	L	T	Q	N	A	D	C	L	V	V	L	D	N	T	A	L	N	R	I	A	T	D	R	L	H	I	Q	N	P	S	F	S	Q	I	N	Q	L	V	S	T	I	M	S	A	S	T	T	T	L	R	Y	P	G	Y	M	N	N	D	L	I	G	L
Template Known Secondary structure						S	S																S		S																G	G	G	T		S	S																	T	T					T	T		S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		214	.	.	.		.	.	220	.	.	.	.	.	.	.	.	.							230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure						.													.	.	.	.	.	.
Query SS confidence						.													.	.	.	.	.	.
Query Sequence		R	T	V	M	.	S	E	M	G	Y	A	M	M	G	S	G	V	.	.	.	.	.	.	A	S	G	E	D	R	A	E	E	A	A	E	M	A	I	S	S	P	L	L	E	D	I	D	L	S	G	A	R	G	V	L	V	N	I	T	A	G	F	D	L	R	L	D	E	F	E	T	V	G	N	T	I	R	A	F
Query Conservation						.													.	.	.	.	.	.
Alig confidence						.													.	.	.	.	.	.
Template Conservation
Template Sequence		I	A	S	L	I	P	T	P	R	L	H	F	L	M	T	G	Y	T	P	L	T	T	D	S	V	R	K	T	T	V	L	D	V	M	R	R	L	L	Q	P	K	N	V	M	V	S	T	G	T	N	H	C	Y	I	A	I	L	N	I	I	Q	G	E	V	D	P	T	Q	V	H	K	S	L	Q	R	I	R	E	R
Template Known Secondary structure							S	S	S	S									S			S					S											T	T	S	G	G	G	B	S	S																	S
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions