Email l.a.kelley@imperial.ac.uk Description P31549 Date Thu Jan 5 11:48:08 GMT 2012 Unique Job ID 55d42c9f592d7e45

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2r6gF_ 100.0 13 PDB header:hydrolase/transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: the crystal structure of the e. coli maltose transporter 2 c3d31D_ 100.0 19 PDB header:transport protein Chain: D: PDB Molecule:sulfate/molybdate abc transporter, permease PDBTitle: modbc from methanosarcina acetivorans 3 d3d31c1 100.0 19 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 4 c3fh6F_ 100.0 16 PDB header:transport protein Chain: F: PDB Molecule:maltose transport system permease protein malf; PDBTitle: crystal structure of the resting state maltose transporter from e.2 coli 5 d2onkc1 100.0 22 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 6 c2onkC_ 100.0 22 PDB header:membrane protein Chain: C: PDB Molecule:molybdate/tungstate abc transporter, permease PDBTitle: abc transporter modbc in complex with its binding protein2 moda 7 d2r6gf2 100.0 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 8 d2r6gg1 99.9 19 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 9 d3dhwa1 99.8 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 10 c1umqA_ 49.9 16 PDB header:dna-binding protein Chain: A: PDB Molecule:photosynthetic apparatus regulatory protein; PDBTitle: solution structure and dna binding of the effector domain2 from the global regulator prra(rega) from r. sphaeroides:3 insights into dna binding specificity 11 d1umqa_ 49.9 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 12 d1ntca_ 48.9 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 13 d1fipa_ 41.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 14 c3e7lD_ 34.6 13 PDB header:transcription regulator Chain: D: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: crystal structure of sigma54 activator ntrc4's dna binding2 domain 15 d1etob_ 34.1 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 16 d1etxa_ 30.3 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 17 c2hx6A_ 29.5 15 PDB header:hydrolase Chain: A: PDB Molecule:ribonuclease; PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb 18 d1g2ha_ 25.7 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:FIS-like 19 c2jwaA_ 14.5 24 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 20 c3rkoF_ 12.0 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 21 c2cw1A_ not modelled 9.6 27 PDB header:de novo protein Chain: A: PDB Molecule:sn4m; PDBTitle: solution structure of the de novo-designed lambda cro fold2 protein 22 c3mk7F_ not modelled 8.6 23 PDB header:oxidoreductase Chain: F: PDB Molecule:cytochrome c oxidase, cbb3-type, subunit p; PDBTitle: the structure of cbb3 cytochrome oxidase 23 d2diia1 not modelled 8.5 11 Fold:BSD domain-like Superfamily:BSD domain-like Family:BSD domain 24 c1pyuD_ not modelled 8.4 15 PDB header:lyase Chain: D: PDB Molecule:aspartate 1-decarboxylase alfa chain; PDBTitle: processed aspartate decarboxylase mutant with ser25 mutated to cys 25 d1cf7a_ not modelled 8.2 10 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Cell cycle transcription factor e2f-dp 26 c3s1bA_ not modelled 8.0 14 PDB header:signaling protein Chain: A: PDB Molecule:mini-z; PDBTitle: the development of peptide-based tools for the analysis of2 angiogenesis 27 c1loiA_ not modelled 8.0 33 PDB header:hydrolase Chain: A: PDB Molecule:cyclic 3',5'-amp specific phosphodiesterase rd1; PDBTitle: n-terminal splice region of rat c-amp phosphodiesterase,2 nmr, 7 structures 28 c2diiA_ not modelled 8.0 11 PDB header:transcription Chain: A: PDB Molecule:tfiih basal transcription factor complex p62 PDBTitle: solution structure of the bsd domain of human tfiih basal2 transcription factor complex p62 subunit 29 d1v54g_ not modelled 7.8 9 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIa Family:Mitochondrial cytochrome c oxidase subunit VIa 30 c2d7dB_ not modelled 7.7 13 PDB header:hydrolase/dna Chain: B: PDB Molecule:40-mer from uvrabc system protein b; PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb 31 d1pf4a2 not modelled 7.5 14 Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region 32 d1st6a6 not modelled 7.4 11 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 33 c1twcF_ not modelled 7.3 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii 23 PDBTitle: rna polymerase ii complexed with gtp 34 d1twff_ not modelled 7.3 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 35 d1v54c_ not modelled 7.3 11 Fold:Cytochrome c oxidase subunit III-like Superfamily:Cytochrome c oxidase subunit III-like Family:Cytochrome c oxidase subunit III-like 36 c2pmzW_ not modelled 7.1 14 PDB header:translation, transferase Chain: W: PDB Molecule:dna-directed rna polymerase subunit k; PDBTitle: archaeal rna polymerase from sulfolobus solfataricus 37 c2kncA_ not modelled 6.7 19 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 d2ns0a1 not modelled 6.6 8 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:RHA1 ro06458-like 39 c1vc3B_ not modelled 6.5 8 PDB header:lyase Chain: B: PDB Molecule:l-aspartate-alpha-decarboxylase heavy chain; PDBTitle: crystal structure of l-aspartate-alpha-decarboxylase 40 d1qkla_ not modelled 6.5 29 Fold:RPB6/omega subunit-like Superfamily:RPB6/omega subunit-like Family:RPB6 41 d2axtj1 not modelled 6.2 30 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 42 d1d5ya2 not modelled 6.2 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:AraC type transcriptional activator 43 c2l0kA_ not modelled 6.2 17 PDB header:transcription Chain: A: PDB Molecule:stage iii sporulation protein d; PDBTitle: nmr solution structure of a transcription factor spoiiid in complex2 with dna 44 d2oy9a1 not modelled 6.1 9 Fold:BH2638-like Superfamily:BH2638-like Family:BH2638-like 45 c3plxB_ not modelled 6.1 15 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: the crystal structure of aspartate alpha-decarboxylase from2 campylobacter jejuni subsp. jejuni nctc 11168 46 c3h0gF_ not modelled 6.0 29 PDB header:transcription Chain: F: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 47 d1v54m_ not modelled 6.0 24 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) Family:Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 48 c3lk3T_ not modelled 5.9 30 PDB header:protein binding Chain: T: PDB Molecule:leucine-rich repeat-containing protein 16a; PDBTitle: crystal structure of capz bound to the cpi and csi uncapping2 motifs from carmil 49 c2l2tA_ not modelled 5.9 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 50 d1sjpa1 not modelled 5.7 13 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:GroEL chaperone, ATPase domain 51 c2oviA_ not modelled 5.6 4 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 52 d2auwa1 not modelled 5.6 10 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 53 d1h6gb1 not modelled 5.5 4 Fold:Four-helical up-and-down bundle Superfamily:alpha-catenin/vinculin-like Family:alpha-catenin/vinculin 54 c2jz1A_ not modelled 5.5 10 PDB header:transcription Chain: A: PDB Molecule:protein doublesex; PDBTitle: dsx_long 55 d1ppya_ not modelled 5.5 15 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Pyruvoyl dependent aspartate decarboxylase, ADC 56 c2vn2B_ not modelled 5.4 8 PDB header:replication Chain: B: PDB Molecule:chromosome replication initiation protein; PDBTitle: crystal structure of the n-terminal domain of dnad protein2 from geobacillus kaustophilus hta426 57 d1q3qa1 not modelled 5.4 15 Fold:GroEL equatorial domain-like Superfamily:GroEL equatorial domain-like Family:Group II chaperonin (CCT, TRIC), ATPase domain 58 c1pt1B_ not modelled 5.4 15 PDB header:lyase Chain: B: PDB Molecule:aspartate 1-decarboxylase; PDBTitle: unprocessed pyruvoyl dependent aspartate decarboxylase with histidine2 11 mutated to alanine 59 c2lhuA_ not modelled 5.4 10 PDB header:structural protein Chain: A: PDB Molecule:mybpc3 protein; PDBTitle: structural insight into the unique cardiac myosin binding protein-c2 motif: a partially folded domain 60 c2ks1B_ not modelled 5.3 17 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 61 d3fapb_ not modelled 5.3 8 Fold:Four-helical up-and-down bundle Superfamily:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) Family:FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 62 c2kvlA_ not modelled 5.2 9 PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7 63 c3qkbB_ not modelled 5.2 5 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a protein with unknown function which belongs to2 pfam duf74 family (pepe_0654) from pediococcus pentosaceus atcc 257453 at 2.73 a resolution 64 c2l37A_ not modelled 5.2 18 PDB header:hydrolase Chain: A: PDB Molecule:ribosome-inactivating protein luffin p1; PDBTitle: 3d solution structure of arginine/glutamate-rich polypeptide luffin p12 from the seeds of sponge gourd (luffa cylindrical) 65 c1ql1A_ not modelled 5.1 12 PDB header:virus Chain: A: PDB Molecule:pf1 bacteriophage coat protein b; PDBTitle: inovirus (filamentous bacteriophage) strain pf1 major coat2 protein assembly 66 c1uheA_ not modelled 5.1 15 PDB header:lyase Chain: A: PDB Molecule:aspartate 1-decarboxylase alpha chain; PDBTitle: crystal structure of aspartate decarboxylase, isoaspargine complex 67 c2rddB_ not modelled 5.0 17 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 68 c2fomA_ not modelled 5.0 17 PDB header:viral protein/protease Chain: A: PDB Molecule:polyprotein; PDBTitle: dengue virus ns2b/ns3 protease 69 d1ku7a_ not modelled 5.0 6 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Sigma3 and sigma4 domains of RNA polymerase sigma factors Family:Sigma4 domain 70 c2e19A_ not modelled 5.0 9 PDB header:transcription Chain: A: PDB Molecule:transcription factor 8; PDBTitle: solution structure of the homeobox domain from human nil-2-2 a zinc finger protein, transcription factor 8