|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | K | S | A | R | I | R | R | A | T | R | A | R | R | K | L | Q | E | L | G | A | T | R | L | V | V | H | R | T | P | R | H | I | Y | A | Q | V | I | A | P | N | G | S | E | V | L | V | A | A | S | T | V | E | K | A | I | A | E | Q | L | K | Y | T | G | N | K | D | A | A | A | A | V | G | K | A | V | A | E | R | A |
Query Conservation |   |
|   |   |   |
|   |   |
|   |   |
|   |
|   |
|
|   |   |   |   |
|
|
|
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |
|
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |
|   |
|
|   |   |
|   |
|   |
|
|   |   |   |   |   |
|
|
|   |
|   |   |
|
|
|
|
|
|
|
|
|
|
|
|   |   |   |   |
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|
|   |   |
|
|   |
|
|
Template Sequence |   |
K | K | S | A | R | I | R | R | A | T | R | A | R | R | K | L | Q | E | L | G | A | T | R | L | V | V | H | R | T | P | R | H | I | Y | A | Q | V | I | A | P | N | G | S | E | V | L | V | A | A | S | T | V | E | K | A | I | A | E | Q | L | K | Y | T | G | N | K | D | A | A | A | A | V | G | K | A | V | A | E | R | A |
Template Known Secondary structure |   |
|
|
|
|  |  |  |  | T | T |
| S |
| S | T | T | T | T | T | T |
|
|
|
| B |  |  |  |
| S | S |
|  |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  | T | T | G | G | G | G | T | S |
|
| S |
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | K | G | I | K | D | V | S | F | D | R | S | G | F | Q | Y | H | G | R | V | Q | A | L | A | D | A | A | R | E | A | G | L |
Query Conservation |   |
  |   |   |
|
|   |   |
|
|
|
|
|   |
|   |   |
|
|
|
|
|   |
|   |
|   |   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|
|
|
|
|   |   |   |   |
|
|
|
|
|   |
|   |
|   |   |   |
|
|   |
|
|
Template Sequence |   |
L | E | K | G | I | K | D | V | S | F | D | R | S | G | F | Q | Y | H | G | R | V | Q | A | L | A | D | A | A | R | E | A | G | L |
Template Known Secondary structure |   |
 |  |  | T |
|
|
|
|
|
| B |
|
| S |
|
| S | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
Template Predicted Secondary structure |   |
 |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |
  |