Job Description P0C018 Confidence 99.79% Date Thu Jan 5 11:29:38 GMT 2012 Rank 9 Aligned Residues 114 % Identity 27% Template c4a1aM_ PDB info PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3. Resolution 3.52 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20								.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																					.	.
Query SS confidence																				.	.	.	.	.	.	.																					.	.
Query Sequence		K	K	S	A	R	I	R	R	A	T	R	A	R	R	K	L	Q	E	.	.	.	.	.	.	.	L	G	A	T	R	L	V	V	H	R	T	P	R	H	I	Y	A	Q	V	I	.	.	A	P	N	G	S	E	V	L	V	A	A	S	T	V	E	K	A	I	A	E	Q	L	K	Y	T	G	N	K	D	A	A	A	A
Query Conservation																				.	.	.	.	.	.	.																					.	.
Alig confidence																				.	.	.	.	.	.	.																					.	.
Template Conservation
Template Sequence		R	R	R	R	E	G	L	T	D	Y	Y	A	R	K	R	L	I	I	Q	D	K	D	K	Y	N	T	P	K	Y	R	L	V	A	R	A	T	N	T	R	I	I	A	Q	I	V	Y	A	T	L	K	C	D	R	V	L	C	A	A	D	S	Y	E	L	K	R	F	G	V	S	T	G	L	A	S	Y	A	A	A	Y	A
Template Known Secondary structure						T	T															T	T	S		S												S	S											S	S										T	T					T	T			S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		74	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.																											90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		V	G	K	A	V	A	E	R	A	L	E	K	.	G	I	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	F	D	R	S	G	F	Q	Y	H	.	.	G	R	V	Q	A	L	A	D	A	A	R	E	A	G	L	Q
Query Conservation														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence														.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation
Template Sequence		T	G	L	L	L	A	R	R	L	L	K	Q	I	G	L	D	T	V	Y	A	G	Q	T	K	V	D	G	A	Y	F	N	V	D	E	D	Q	K	E	K	K	P	F	K	A	I	L	D	A	G	L	V	R	T	T	T	G	N	R	V	F	G	V	L	K	G	A	C	D	G	G	I	N
Template Known Secondary structure															T		T	T	T					S	S				S				G	G	G	T			S	S				B						T	T	S				S	S													T	T		B
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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