Job Description P0AD70 Confidence 97.48% Date Thu Jan 5 11:20:09 GMT 2012 Rank 65 Aligned Residues 289 % Identity 15% Template d1rp5a4 SCOP info beta-lactamase/transpeptidase-like beta-lactamase/transpeptidase-like beta-Lactamase/D-ala carboxypeptidase Resolution 3.00

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.											.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
Predicted Secondary structure																																	.	.								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.								.	.	.	.	.	.	.	.	.	.
Query Sequence		P	E	F	A	S	D	I	V	D	R	Y	A	D	H	I	F	Y	G	S	G	A	T	G	M	A	L	V	V	I	D	G	.	.	N	Q	R	V	F	R	S	.	.	.	.	.	.	.	.	.	.	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M	T	S	E
Query Conservation																																	.	.								.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	P	L	Q	S	F	M	E	T	Q	M	D	A	F	Q	E	K	V	K	G	K	Y	M	T	A	T	L	V	S	A	K	T	G	E	I	L	A	T	T	Q	R	P	T	F	D	A	D	T	K	E	G	I	T	E	D	F	V	W	R	D	I	L	Y	Q	S	N	Y	E	P	G	S	T	M	K	V	M	M	L	A
Template Known Secondary structure																							S									T	T	T		B								S			B	T	T	T	T	B	T			S	S						T	T	T	S			B			G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	.	.	.	.	.	.	.	.	.	S	K	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence					.	.	.												.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	.	.	.	D	N	N	T	F	P	G	G	E	V	F	N	S	S	E	L	K	I	A	D	A	T	I	R	D	W	D	V	N	E	G	L	T	G	G	R	M	M	T	F	S	Q	G	F	A	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					.	.	.			T				T	T						S					T	T										T	T	S		S													T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure					.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		346	.	.				.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.														.	.	.	.	.					.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.														.	.	.	.	.					.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	N	V	G	M	T	L	L	E	Q	.	.	.	K	M	G	D	A	T	W	L	D	Y	L	N	R	.	.	.	.	.	F	K	F	G	.	.	.	.	V	P	T	R	F	G	L	T	D	E	Y	A	G	Q	L	P	A	D	N	I	V	N	I	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.														.	.	.	.	.	T	T	T	T	.	.	.	.	S					S		S	S					B				S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.														.	.	.	.	.					.	.	.	.
Template SS confidence
																			396	.	.	.	400	.	.	.	.	.				.	.	.	.	410	.	.	.	.	.	.	.	.						.	420	.	.					.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.																					300	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	A	I	G	S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	P	G	K	A	D
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	A	F	G	Q	G	I	S	V	T	Q	T	Q	M	L	R	A	F	T	A	I	A	N	D	G	V	M	L	E	P	K	F	I	S	A	L	Y	D	P	N	D	Q	S	V	R	K	S	Q	K	E	I	V	G	N	P	V	S	K	E	A	A	S	V	T	R	D	H	M	V	M	V	G	T	D	P	T	Y	G	T
Template Known Secondary structure				T	T	T		S		B	B														T	T	T						B								T	T	T	T														S																			T	T	T		T
Template Predicted Secondary structure
Template SS confidence
		447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.																330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Query Sequence		A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	F	I	T	Y	M	A	M	I	P	.	.	Q	K	N	I	G	A	F	V	V	V	T	R	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		M	Y	N	H	S	T	G	K	A	T	V	N	V	P	G	Q	N	V	A	L	K	S	G	T	A	E	I	A	D	E	K	N	G	G	Y	L	T	G	S	T	N	N	I	F	S	V	V	S	M	H	P	A	E	N	P	D	F	I	L	Y	V	T	V	Q	Q	P	E	H	Y	S	G	I	Q	L	G	E	F	A	N	P
Template Known Secondary structure		T	B		T	T	T	S	S	B	S	S		B	T	T	B												B		T	T	T	S	S	B			S	S	S	S										S	T	T	S		S									S		S	S
Template Predicted Secondary structure
Template SS confidence
		527	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.
		370	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	T	E	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	E	R	A	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		607	.	.	610	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions