Phyre 2 alignment of P0AD70 with c3qhyA

Job Description P0AD70
Confidence 98.79% Date Thu Jan 5 11:20:09 GMT 2012

Rank 56 Aligned Residues 248

% Identity 15% Template c3qhyA_

PDB info PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:beta-lactamase; PDBTitle: structural, thermodynamic and kinetic analysis of the picomolar2 binding affinity interaction of the beta-lactamase inhibitor protein-3 ii (blip-ii) with class a beta-lactamases

Resolution 2.06 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	36	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence	D	R	Y	A	D	H	I	F	Y	G	S	.	G	A	T	G	M	A	L	V	V	I	D	G	N	Q	R	V	F	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M	T	S	E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	S	K
Query Conservation												.
Alig confidence												.																		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	H	K	E	F	S	Q	L	E	K	K	F	D	A	R	L	G	V	Y	A	I	D	T	G	T	N	Q	T	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	P	N	E	R	F	A	F	A	S	T	Y	K	A	L	A	A	G	V	L	L	Q	Q	N	S	T	K	K	L	D	E	V	I	T	Y	T	K
Template Known Secondary structure												T										T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T						G	G	G													S		G	G	G	G	G	S						G
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.														.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.

	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	V	D	Y	S	P	V	T	E	K	H	V	D	T	G	M	T	L	G	E	I	A	E	A	A	V	R	Y	S	.	.	.	.	.	.	.	.	.	.	.	D	N	T	A	G	N	I	L	F	H	K
Template Known Secondary structure	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S		T	T	T	T	T	S	T	T	T																.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	100	.																												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130												.	.	.	.	.	.	.	.	.	140	.

	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y
Query Conservation
Alig confidence		.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	.	.	.	.	.	.	G	G	P	K	G	Y	E	K	.	A	L	R	Q	M	G	D	R	V	T	M	S	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	E	T	E	L	N	E	A	I	P	G	D	I	R	D	T	S	T	A	K	A	I	A	T	N	L	K	A	F	T	A	G	N	A	L
Template Known Secondary structure	T	.	.	.	.	.	.	T								.					T	T			S		B				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	G	G	G				T	T			T	T																	S	S	S	S
Template Predicted Secondary structure		.	.	.	.	.	.									.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	142							.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.																.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.

	275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.		.	.	.	.	.	.	.	.	340			.	.	.	.	.		.	.	.	.	350
Predicted Secondary structure																																																										.										.	.						.
Query SS confidence																																																										.										.	.						.
Query Sequence	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	.	G	G	F	I	T	Y	M	A	M	.	.	I	P	Q	K	N	.	I	G	A	F	V
Query Conservation																																																										.										.	.						.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.										.	.						.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	P	N	H	K	R	N	I	L	T	K	W	M	K	G	N	A	T	G	D	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	A	G	V	P	T	N	W	V	V	A	D	K	S	G	A	G	S	Y	G	T	R	N	D	I	A	I	V	W	P	P	N	R	A	P	I	I	I	A	I
Template Known Secondary structure													B	S		G	G	G	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		T	T	S										T	T	T											T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220																			.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

	351	.	.	.				.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure					.	.	.
Query SS confidence					.	.	.
Query Sequence	V	V	T	R	.	.	.	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L
Query Conservation					.	.	.
Alig confidence					.	.	.
Template Conservation
Template Sequence	L	S	S	K	D	E	K	G	A	T	Y	D	N	Q	L	I	A	E	A	A	E	V	I	V	N	A	F
Template Known Secondary structure					S	S	T	T																			T
Template Predicted Secondary structure
Template SS confidence
	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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