Job Description P0AD70 Confidence 98.05% Date Thu Jan 5 11:20:09 GMT 2012 Rank 61 Aligned Residues 288 % Identity 17% Template c3pbqA_ PDB info PDB header:hydrolase/antibiotic Chain: A: PDB Molecule:penicillin-binding protein 3; PDBTitle: crystal structure of pbp3 complexed with imipenem Resolution 1.70 Å

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		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.									.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																																	.	.						.																			.	.	.	.	.	.	.	.
Query SS confidence																																	.	.						.																			.	.	.	.	.	.	.	.
Query Sequence		P	E	F	A	S	D	I	V	D	R	Y	A	D	H	I	F	Y	G	S	G	A	T	G	M	A	L	V	V	I	D	G	.	.	N	Q	R	V	F	.	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	.	.	.	.	.	.	.	.	V	V	R	I	A	S	L	T	K	L	M	T	S	E	M
Query Conservation																																	.	.						.																			.	.	.	.	.	.	.	.
Alig confidence																																	.	.						.																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	L	R	L	Q	Y	L	A	H	R	E	L	R	N	A	L	L	E	N	G	A	K	A	G	S	L	V	I	M	D	V	K	T	G	E	I	L	A	M	T	N	Q	P	T	Y	N	P	N	N	R	R	N	L	Q	P	A	A	M	R	N	R	A	M	I	D	V	F	E	P	G	S	T	V	K	P	F	S	M	S	A
Template Known Secondary structure																				T	T											T	T	T		B								S				T	T			S	S			T	T	T	T									B	B		G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.							.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure																													.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.
Query Sequence		L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	S	K	Y	A	P	P	G	A	R	V	P	.	.	.	.	.	.	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K	Y	L	S	T
Query Conservation																													.	.	.	.	.	.
Alig confidence		.	.	.																									.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	A	L	A	S	G	R	W	K	P	S	D	I	V	D	V	Y	P	G	T	L	Q	I	G	R	Y	T	I	R	D	V	S	R	N	S	R	Q	L	D	L	T	G	I	L	I	K	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.				T	T	S			T	T						T	T	S					T	T						S	S				S										T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
					304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
		171	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L	A	A	I	G
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.															.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.															.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	G	I	S	K	I	A	.	.	.	F	D	I	G	A	E	S	I	Y	S	V	M	Q	Q	.	.	.	.	.	V	G	L	G	Q	D	T	G	L	G	F	P	G	E	R	V	G	N	L	P	N	H	R	K	W	P	K	A	E	T	A	T	L	A	Y	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.															.	.	.	.	.	T	T	T	T	S			S				T	T					B					S	S											T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.	.															.	.	.	.	.
Template SS confidence
																351	.	.	.	.	.	.	.				.	360	.	.	.	.	.	.	.	.	.	370	.	.						.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.													.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																						.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.
Template Conservation				.																																																																								.	.	.	.	.	.
Template Sequence		Y	G	.	L	S	V	T	A	I	Q	L	A	H	A	Y	A	A	L	A	N	D	G	K	S	V	P	L	S	M	T	R	V	D	R	V	P	D	G	V	Q	V	I	S	P	E	V	A	S	T	V	Q	G	M	L	Q	Q	V	V	E	A	Q	G	G	V	F	R	A	Q	V	P	G	Y	H	A	.	.	.	.	.	.
Template Known Secondary structure			S	.		B	B														T	T	T						B	S	B			S	S								S																		S	T	T	S		G	G	G		B	T	T	B			.	.	.	.	.	.
Template Predicted Secondary structure				.																																																																								.	.	.	.	.	.
Template SS confidence
		409	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		319	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.		.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.							.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure														.	.					.									.	.											.	.	.	.	.	.
Query SS confidence														.	.					.									.	.											.	.	.	.	.	.
Query Sequence		E	G	R	P	G	I	I	Q	K	T	G	G	.	.	G	G	G	F	.	I	T	Y	M	A	M	I	P	.	.	Q	K	N	I	G	A	F	V	V	V	.	.	.	.	.	.	T	R	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L	S	G	N	K	P	L	V	I	P
Query Conservation														.	.					.									.	.											.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.							.	.					.									.	.											.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	A	G	K	S	G	T	A	R	K	N	A	Y	R	S	L	F	A	G	F	A	P	A	T	D	P	R	I	A	M	V	V	V	I	D	E	P	S	K	A	G	Y	F	G	G	L	V	S	A	P	V	F	S	K	V	M	A	G	A	L	R	L	M	N	V	P	P	D	N	L	P
Template Known Secondary structure		.	.	.	.	.	.																					S	T	T	S														S	S								T															T	T						S
Template Predicted Secondary structure		.	.	.	.	.	.
Template SS confidence
								482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions