 |
Job Description | P0AD70 | Confidence | 94.53% | Date | Thu Jan 5 11:20:09 GMT 2012 |
Rank | 81 | Aligned Residues | 105 |
% Identity | 10% | Template | c3dwkC_ |
PDB info |
PDB header:transferase | Chain: C: PDB Molecule:penicillin-binding protein 2; |
PDBTitle: identification of dynamic structural motifs involved in2 peptidoglycan glycosyltransfer
|
Resolution | 3.10 Å |
|
 |
  |   |
34 | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
50 | . | . | . | . | . | |
. | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | V | D | R | Y | A | D | H | I | F | Y | G | S | G | A | T | . |
. |
. |
. |
. |
. |
G | M | A | L | V | V | . |
I | D | G | N | Q | R | V | F | R | S | Y | G | E | T | R | P | G | N | N | V | R | P | Q | L | D | S | V | V | R | I | A | S | L | T | K | L | M | T | S | E | M | L | V | K | L | L | D | Q | G | T | V |
Query Conservation |   |
  |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
| . | . | . | . | . | . |
|   |   |   |   |
| . |   |   |   |
|   |
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |
|
|
|   |
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |   |
|
|   |
|
|
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|   |
|
|   |   |   |
|
|
| . | . |
|
|
|   |
|   |   |
Template Sequence |   |
D | V | Q | K | T | L | Q | N | D | V | D | N | G | S | F | Y | K | N | K | D | Q | Q | V | G | A | T | I | L | D | S | K | T | G | G | L | V | A | I | S | G | G | R | D | F | K | D | V | V | N | R | N | Q | A | T | D | P | H | P | T | G | S | S | L | K | P | F | L | A | Y | G | P | . |
. |
A | I | E | N | M | K | W |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
| S |
|
| S | S | T | T |  |  |  |  |  |  |  |  |  | T | T | T |
| B |  |  |  |  |  |
| S | T | T |
|
| T | T | T | S |
|
| T | T | T | S |
|  |  |
| G | G | G | G |  |  |  |  | T |  |  |  | . | . |  |  |  |  | S |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
338 | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | |
|
. | 410 | . | . | . | . | . |
  |
  |   |
107 | . | . | 110 | . | . | . | . | . | . | . | |
|
|
|
|
|
. | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | L | N | D | P | L | S | K | Y | A | P | . |
. |
. |
. |
. |
. |
P | G | A | R | V | P | T | Y | N | G | T | P | I | T | L | V | N | L | A | T | H | T | S |
Query Conservation |   |
  |
|
|
|   |
|   |   |
|
|
| . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |
|
|
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |
|   |
|
|
|   |   |
|
|   |   |
|   |
Template Sequence |   |
A | T | N | H | A | I | Q | D | E | S | S | Y | Q | V | D | G | S | T | F | R | N | Y | D | T | K | S | H | G | T | V | S | I | Y | D | A | L | R | Q | S | F |
Template Known Secondary structure |   |
| T | T | B |  |  |  |
|
| S |
|
| B | S | S | S |
| B |
|
|
| T | T |
|
|
|
|
|  |  |  |  |  |  |  |  |  | T | T |
|
Template Predicted Secondary structure |   |
|
|
|
|  |  |  |
|
|
|
|  |  |  |
|
|  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
416 | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|