Job Description P0AD70 Confidence 99.11% Date Thu Jan 5 11:20:09 GMT 2012 Rank 43 Aligned Residues 244 % Identity 20% Template c3a3jA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:pbp5; PDBTitle: crystal structures of penicillin binding protein 5 from2 haemophilus influenzae Resolution 2.15 Å

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		47	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.								.	.	.	.	.
Predicted Secondary structure														.	.																																																							.	.	.	.	.	.	.
Query SS confidence														.	.																																																							.	.	.	.	.	.	.
Query Sequence		G	A	T	G	M	A	L	V	V	I	D	G	.	.	N	Q	R	V	F	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M	T	S	E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	.	.	.	.	.	.	.	S	K	Y	A	P
Query Conservation														.	.																																																							.	.	.	.	.	.	.
Alig confidence														.	.									.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	T	A	Q	T	Y	V	L	M	D	Y	N	S	G	A	I	L	T	A	L	N	.	.	.	.	.	.	.	.	.	.	.	.	P	D	Q	R	Q	Y	P	A	S	L	T	K	M	M	T	S	Y	V	V	G	V	A	L	K	Q	G	K	I	H	N	T	D	M	V	T	I	G	E	S	A	W	G	R	N	F	P
Template Known Secondary structure					S	S							T	T	T								S	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S		B			G	G	G															T	T	S	S		T	T							T	T	T		G	G	G		T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		35	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.													.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	A	R	V	P	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Sequence		D	S	S	K	M	F	L	D	L	N	T	Q	V	S	V	A	D	L	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	V	I	V	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	G	N	D	A	T	V	A	L	A	E	H	I	.	S
Template Known Secondary structure		T	S							T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																												.	.	.	.	.	.														.	130	.	.	.	.	.	.	.	.	.	140		.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	Q	R	S
Query Conservation
Alig confidence														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		G	N	V	P	N	F	V	E	T	M	N	K	.	Y	V	Q	Q	F	G	L	K	N	T	N	F	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	H	G	L	D	D	P	N	Q	Y	S	S	A	R	D	M	A	I	I	G	A	H	I	I	R	D	.	.	.	.	.	.
Template Known Secondary structure		S	S											.					T	T		S	S		B		S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S					T	T		B	B																.	.	.	.	.	.
Template Predicted Secondary structure														.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.		.	.	.	.	.	.	160	.	.	.	.	.	.	.																						.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	G	G	F	I	T	Y	M	A	M	I	P	Q	K	N	I	G	A	F	V	V	V	T	R	S	P	L
Query Conservation
Alig confidence		.	.	.																																			.	.	.	.	.	.
Template Conservation		.	.	.																																			.	.	.	.	.	.
Template Sequence		.	.	.	L	P	E	E	Y	K	I	Y	S	E	K	D	F	T	F	N	K	I	K	Q	P	N	R	N	G	L	L	W	D	K	T	I	N	V	.	.	.	.	.	.	D	G	M	K	T	G	H	T	S	Q	A	G	Y	N	L	V	A	S	A	T	T	S	N	N	M	R	L	I	S	V	V	M	G	V	P	T	Y
Template Known Secondary structure		.	.	.						G	G	G	G							T	T						S		G	G	G	G		T	T	S			.	.	.	.	.	.									T	T	T											T	T												S	S
Template Predicted Secondary structure		.	.	.																																			.	.	.	.	.	.
Template SS confidence
					194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.							.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence		T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L	S	G	N	K	P	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	G	R	E	V	E	S	K	K	L	L	Q	W	G	F	A	N	F	E	T	F	K	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions