Job Description P0AD70 Confidence 76.60% Date Thu Jan 5 11:20:09 GMT 2012 Rank 93 Aligned Residues 151 % Identity 14% Template c3a3eB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:penicillin-binding protein 4; PDBTitle: crystal structure of penicillin binding protein 4 (dacb)2 from haemophilus influenzae, complexed with novel beta-3 lactam (cmv) Resolution 2.40 Å

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		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.						.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	.	.	.	.	.	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.								.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	S	D	N	Q	I	A	D	S	L	F	R	A	V	A	F	N	Y	Y	K	R	P	A	S	F	Q	L	G	T	L	A	V	K	S	.	I	L	Q	K	Q	G	I	R	F	G	N	S	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	D	G	S	G	L
Template Known Secondary structure				T																		S	S		B												.				T	T	T				T	T		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S	S
Template Predicted Secondary structure																																					.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.		.	.	.	.	.	.	.	350	.	.	.	.	.																									.	.	.	.	360	.	.
						255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	R	H	N	L	V	A	P	K	T	M	L	S	V	L	E	Y	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	K	N	E	D	K	L	H	L	M	E	T	F	P	I	A	G	V	D	G	T	I	S	G	R	G	G	L	I	S	P	P	L	V	K	N	V	I	A	K	T	G	S
Template Known Secondary structure			T	T		B	B													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T							G	G	G	S		B	T	T	T	S	G	G	G	S	S		G	G	G	S	S	T	T	T	T	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380																				.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.				.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360							.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure															.	.	.																		.	.	.	.	.	.
Query SS confidence															.	.	.																		.	.	.	.	.	.
Query Sequence		G	G	G	F	I	T	Y	M	A	M	I	P	Q	.	.	.	K	N	I	G	A	F	V	V	V	T	R	S	P	L	T	R	F	.	.	.	.	.	.	K	N	M	S	D	G	I	N	D	L	V	T	E	L
Query Conservation															.	.	.																		.	.	.	.	.	.
Alig confidence															.	.	.																		.	.	.	.	.	.
Template Conservation
Template Sequence		L	K	G	V	Y	N	L	A	G	F	M	T	N	A	R	G	E	K	V	A	F	V	Q	F	I	N	G	Y	S	T	G	D	L	E	S	K	T	K	R	A	P	L	V	Q	F	E	R	N	L	Y	N	E	L
Template Known Secondary structure			T	T											T	T	S											S				S		T	T
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions