Job Description P0AD70 Confidence 99.27% Date Thu Jan 5 11:20:09 GMT 2012 Rank 27 Aligned Residues 258 % Identity 15% Template c2wuqA_ PDB info PDB header:transcription Chain: A: PDB Molecule:beta-lactamase regulatory protein blab; PDBTitle: crystal structure of blab protein from streptomyces cacaoi Resolution 1.80 Å

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		33	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		D	I	V	D	R	Y	A	D	H	I	F	Y	G	S	G	A	T	G	M	A	L	V	V	I	D	.	.	G	N	Q	R	V	F	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M	T	S	E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D
Query Conservation																											.	.
Alig confidence																				.							.	.							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	S	L	L	R	E	L	R	D	A	L	H	E	G	G	L	T	G	.	S	F	L	V	R	D	L	Y	T	G	E	E	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	I	D	P	D	T	E	L	P	T	A	S	L	V	K	L	P	L	A	L	A	T	L	E	R	I	R	L	G	E	V	D	G	A	Q
Template Known Secondary structure															T	T				.							T	T	T						.	.	.	.	.	.	.	.	.	.	.	.	.		S	T	T						G	G	G	G														T	T	S	S		T	T
Template Predicted Secondary structure																				.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.		.	.	.	.	.	.	.	30	.	.	.	.	.	.														.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	K	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	I	E	V	A	P	G	R	I	T	T	P	G	P	T	G	L	S	R	F	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	P	A	R	V	A	V	D	D	L	L	Y	L	S	T	S	V	S	.	.	.	.	.	.	.	.	.	.	.	D	G	T	A	S	D	A
Template Known Secondary structure												S	S	S			G	G	G	G		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																S		.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																								.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.												110	.	.	.	.	.	.
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R	G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S
Query Conservation
Alig confidence							.	.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	F	E	I	T	.	.	.	.	.	.	.	P	P	A	Q	V	E	Q	.	M	V	R	E	W	G	F	R	D	L	T	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	S	M	R	E	H	R	V	P	Q	L	D	V	A	R	A	N	T	G	T	A	R	A	F	V	D	L	L	E	A	L	W	A
Template Known Secondary structure						S	.	.	.	.	.	.	.								.					T	T			S				.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T				S	G	G	G		T	T	T	S																	G
Template Predicted Secondary structure							.	.	.	.	.	.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		117	.	.	120	.								.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140															.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.				.	.
Predicted Secondary structure																																																																													.	.	.
Query SS confidence																																																																													.	.	.
Query Sequence		S	D	F	Y	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	G	G	F	I	T	Y	M	A	M	I	P	Q	K	N	.	.	.	I	G
Query Conservation																																																																													.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	L	T	G	P	A	L	P	P	E	P	A	A	R	L	R	E	L	M	A	A	N	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	H	R	L	A	P	D	F	A	S	D	A	A	T	W	S	S	K	T	G	T	L	L	N	L	R	H	E	V	G	V	V	E	H	A	D	G	Q	V	F	A
Template Known Secondary structure		G	G																				T				.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S						B	T	T											T	T											T	T	S
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.															230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	V	V	V	T	R	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	V	L	T	E	S	Q	V	P	A	D	S	Q	P	G	A	E	A	L	M	A	Q	V	A	R	R
Template Known Secondary structure									S	S			S
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions