Job Description P0AD70 Confidence 97.43% Date Thu Jan 5 11:20:09 GMT 2012 Rank 66 Aligned Residues 285 % Identity 18% Template c2wadB_ PDB info PDB header:peptide binding protein Chain: B: PDB Molecule:penicillin-binding protein 2b; PDBTitle: penicillin-binding protein 2b (pbp-2b) from streptococcus2 pneumoniae (strain 5204) Resolution 2.18 Å

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		34	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80							.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.														.	.																							.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.														.	.																							.	.	.	.	.	.
Query Sequence		I	V	D	R	Y	A	D	H	I	F	Y	G	.	.	.	.	.	.	.	.	.	.	.	S	G	A	T	G	M	A	L	V	V	I	D	G	.	.	N	Q	R	V	F	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	.	.	.	.	.	.	S	V	V	R	I	A	S	L	T	K	L	M	T	S
Query Conservation														.	.	.	.	.	.	.	.	.	.	.														.	.																							.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.														.	.								.															.	.	.	.	.	.
Template Conservation																																															.
Template Sequence		A	F	Q	D	S	V	D	A	L	L	K	S	Y	F	N	S	E	L	G	N	G	G	A	K	Y	S	E	G	V	Y	A	V	A	L	N	P	Q	T	G	A	V	L	S	M	S	.	G	L	K	H	D	L	K	T	G	E	L	T	P	D	S	L	G	T	V	T	N	V	F	V	P	G	S	V	V	K	A	A	T	I
Template Known Secondary structure																						S	T	T	T	T											T	T	T		B						.						T	T	T							T	T							B			G	G	G	G
Template Predicted Secondary structure																																															.
Template SS confidence
		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																					.	.	.																.	.	.	.	.																																	.	.	.	.	.	.
Query SS confidence																					.	.	.																.	.	.	.	.																																	.	.	.	.	.	.
Query Sequence		E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	S	.	.	.	K	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	.	.	.	.	.	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	.	.	.	.	.	.
Query Conservation																					.	.	.																.	.	.	.	.																																	.	.	.	.	.	.
Alig confidence				.	.	.															.	.	.																.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		S	S	.	.	.	G	W	E	N	G	V	L	S	G	N	Q	T	L	T	D	Q	P	I	V	F	Q	G	S	A	P	I	Y	S	W	Y	K	L	A	Y	G	S	F	P	I	T	A	V	E	A	L	E	Y	S	S	N	A	Y	V	V	Q	T	A	L	G	I	M	G	Q	T	Y	Q	P	N	M	F	V	G	T	S	N
Template Known Secondary structure				.	.	.				T	T	S			S	S								B		B	T	T	S			B			T	T	T	T	T	T		S												T													T	T					T	T	B					T	T
Template Predicted Secondary structure				.	.	.
Template SS confidence
		394	.				.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
						161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	R	E	Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	S	A	M	G	K	L	R	S	T	F	G	E	Y	G	L	G	S	A	T	G	I	D	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	S	T	G	L
Template Known Secondary structure															T	T	T	T	T	S					S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						B
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.																																																	.	.	.	500	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.																														280	.	.	.	.	.	.
Predicted Secondary structure																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	.	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	Q	R	S	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	R	M	Q	T	L
Query Conservation																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	P	K	E	Y	N	F	A	N	F	I	T	N	A	F	G	Q	F	D	N	Y	T	P	M	Q	L	A	Q	Y	V	A	T	I	A	N	N	G	V	R	L	A	P	H	I	V	E	G	I	Y	D	N	N	D	K	G	G	L	G	E	L	I	Q	A	I	D	T	K	E	I	N	K	V	N	I	S	E	S	D	M	A
Template Known Secondary structure				S	S										T	T	T	S	S	S	B	B														T	T	T						B	S									T	T	S	S																	S	S
Template Predicted Secondary structure
Template SS confidence
		503	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure																																																										.	.
Query SS confidence																																																										.	.
Query Sequence		I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	G	G	F	I	T	Y	M	A	M	I	P	.	.	Q	K	N	I	G	A	F	V	V	V	T	R	S	P	L	T	R	F	K	N	M	S
Query Conservation																																																										.	.
Alig confidence																														.	.	.	.	.	.	.	.										.	.	.									.	.
Template Conservation																														.	.	.	.	.	.	.	.										.	.	.
Template Sequence		I	L	H	Q	G	F	Y	Q	V	S	H	G	T	S	P	L	T	T	G	R	A	F	S	D	G	A	T	V	.	.	.	.	.	.	.	.	S	I	S	G	K	T	G	T	N	.	.	.	T	N	A	V	A	Y	A	P	T	E	N	P	Q	I	A	V	A	V	V	F	P	H	N	T	N	L	T	K	N	V	G	P
Template Known Secondary structure															S	T	T				G	G	G	T	T	T		S	S	.	.	.	.	.	.	.	.										.	.	.								S	T	T	S										T	T				S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.										.	.	.
Template SS confidence
		583	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610									.	.	.	.	.	.	.	.	.				620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	I	N	D	L	V	T	E	L	S	G	N	K	P	L	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	I	A	R	D	I	I	N	L	Y	N	Q	H	H	P	M	N
Template Known Secondary structure															S
Template Predicted Secondary structure
Template SS confidence
		664	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions