Job Description P0AD70 Confidence 100.00% Date Thu Jan 5 11:20:09 GMT 2012 Rank 2 Aligned Residues 333 % Identity 19% Template c2qmiH_ PDB info PDB header:hydrolase Chain: H: PDB Molecule:pbp related beta-lactamase; PDBTitle: structure of the octameric penicillin-binding protein2 homologue from pyrococcus abyssi Resolution 2.20 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																		.
Query SS confidence																																		.
Query Sequence		S	D	I	V	D	R	Y	A	D	H	I	F	Y	G	S	G	A	T	G	M	A	L	V	V	I	D	G	N	Q	R	V	F	.	R	S	Y	G	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M	T	S	E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D
Query Conservation																																		.
Alig confidence																																		.
Template Conservation
Template Sequence		V	G	K	L	E	S	F	I	V	E	K	M	A	E	R	K	V	P	G	I	S	I	S	I	I	K	D	G	D	V	V	Y	A	K	G	F	G	Y	R	N	V	E	A	R	L	P	S	T	P	E	T	I	Y	G	I	G	S	I	T	K	S	F	T	A	L	A	I	M	K	L	V	E	E	G	G	L	S	L	D	D
Template Known Secondary structure																T	T											T	T													T	T	T	T					T	T		B				G	G	G															T	T	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.									.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.
Query Sequence		P	L	S	K	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	.	.	.	.	.	.	.	.	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E	Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A
Query Conservation																																						.	.	.	.	.	.	.	.
Alig confidence											.	.	.																									.	.	.	.	.	.	.	.
Template Conservation											.	.	.
Template Sequence		P	V	E	K	F	V	N	I	K	.	.	.	L	R	P	F	G	E	P	V	T	V	H	H	L	L	T	H	S	S	G	I	P	S	L	G	Y	A	E	A	F	I	D	G	M	V	G	G	D	N	W	L	P	V	S	T	P	E	E	T	I	A	F	A	R	D	M	E	K	W	A	V	A	K	P	G	E	R	F	F
Template Known Secondary structure		B	G	G	G	T	S	S	S		.	.	.			G	G	G				B						T	T		S	S														T	T	T		S							S								G	G	G	G	G	G	G			S		T	T	T
Template Predicted Secondary structure											.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.		.	.	.	.	.	.	.	.						240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																			.									.	.	.	.	.
Query SS confidence																																																			.									.	.	.	.	.
Query Sequence		Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	.	L	M	V	A	E	R	G	A	.	.	.	.	.	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V	Y	S
Query Conservation																																																			.									.	.	.	.	.
Alig confidence																																																			.									.	.	.	.	.
Template Conservation
Template Sequence		Y	L	N	T	G	Y	V	L	L	G	K	I	I	E	K	V	S	G	V	S	Y	E	E	Y	I	K	K	K	I	L	E	P	L	G	M	N	R	S	Y	F	F	K	E	E	V	E	K	D	K	D	V	A	M	G	Y	I	L	D	K	E	G	R	L	V	P	Q	P	F	P	Y	G	I	T	A	D	G	G	L	L	S
Template Known Secondary structure																			S	S										T	T	G	G	G	T		T	T		B							T	T	S	S	S	B								T	T	S									T	T			T	T	T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K	A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	G	G	F	I	T
Query Conservation
Alig confidence																	.	.	.	.																					.	.	.																						.
Template Conservation																	.	.	.	.																					.	.	.																						.
Template Sequence		S	V	L	D	L	A	K	Y	L	K	M	Y	I	E	R	.	.	.	.	D	E	S	I	V	S	K	E	Y	I	E	K	M	E	T	S	Y	I	K	V	.	.	.	P	W	E	I	F	G	G	E	G	Y	G	Y	G	L	I	I	Y	P	N	F	L	.	G	E	K	L	V	G	H	S	G	S	V	G	M	Y	T	G
Template Known Secondary structure															T	T	.	.	.	.			S	S	S									T	S						.	.	.	S			S	S	S						S	S	S							T	.	T											S	S
Template Predicted Secondary structure																	.	.	.	.																					.	.	.																						.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.					.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.				.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	A	M	I	P	Q	K	N	I	G	A	F	V	V	V	T	R	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L	S	G	N	K	P
Query Conservation
Alig confidence																							.	.	.	.
Template Conservation																							.	.	.	.
Template Sequence		Y	I	G	Y	I	P	E	K	K	I	G	V	A	V	L	E	N	S	S	G	Y	.	.	.	.	P	P	S	Y	I	A	M	Y	A	L	A	L	L	L	G	K	N	P
Template Known Secondary structure							G	G	G	T								S	S	S	S	S	.	.	.	.															T
Template Predicted Secondary structure																							.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.					.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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