Job Description P0AD70 Confidence 93.51% Date Thu Jan 5 11:20:09 GMT 2012 Rank 84 Aligned Residues 271 % Identity 15% Template c1mwuA_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:penicillin-binding protein 2a; PDBTitle: structure of methicillin acyl-penicillin binding protein 2a2 from methicillin resistant staphylococcus aureus strain3 27r at 2.60 a resolution. Resolution 2.60 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.																					.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	D	R	Y	A	D	H	I	F	Y	G	S	G	A	T	G	M	A	L	V	V	.	I	D	G	N	Q	R	V	F	R	S	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	R	P	G	N	N	V	R	P	Q	L	D	S	V	V	R	I	A	S	L	T	K	L	M
Query Conservation																								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.								.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.
Template Conservation															.	.																																																														.
Template Sequence		K	V	Q	K	S	I	Y	N	N	M	K	N	D	.	.	Y	G	S	G	T	A	I	H	P	Q	T	G	E	L	L	A	L	V	S	T	P	S	Y	D	V	Y	P	F	M	Y	G	M	S	N	E	E	Y	N	K	L	T	E	D	K	K	E	P	L	L	N	K	F	Q	I	T	T	S	P	G	T	Q	.	K	I	L
Template Known Secondary structure										T	T	T	T	S	.	.									T	T	T		B								S				S																			T	T		T	T	S		T	T	T	S		B						.
Template Predicted Secondary structure															.	.																																																														.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.		.	.	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.										.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.																	.
Query SS confidence																						.	.	.	.	.	.	.	.	.																	.
Query Sequence		T	S	E	M	L	V	K	L	L	D	Q	G	T	V	K	L	N	D	P	L	.	.	.	.	.	.	.	.	.	S	K	Y	A	P	P	G	A	R	V	P	T	Y	N	G	T	.	P	I	T	L	V	N	L	A	T	H	T	S	A	L	P	R	E	Q	P	G	G	A	A	H	R	P	V	F	V	W	P	T	R	E
Query Conservation																						.	.	.	.	.	.	.	.	.																	.
Alig confidence								.	.	.												.	.	.	.	.	.	.	.	.																	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	M	I	G	L	.	.	.	N	N	K	T	L	D	D	K	T	S	Y	K	I	D	G	K	G	W	Q	K	D	K	S	W	G	G	Y	N	V	T	R	Y	E	V	V	N	G	N	I	D	L	K	Q	A	I	E	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								.	.	.			T	S			T	T							S	S				S	S	G	G	G	T	T						S	S														T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.	.																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.				.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.						.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		Q	R	W	K	Y	L	S	T	A	K	L	K	A	A	P	G	S	Q	A	A	Y	S	N	L	A	F	D	L	L	A	D	A	L	A	N	A	S	G	K	P	Y	T	Q	L	F	E	E	Q	I	T	R	.	.	.	.	.	P	L	G	M	K	D	T	T	Y	T	P	S	P	D	Q	C	R	R	L	M	V	A	E	R
Query Conservation																																																					.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																			.	.	.	.	.																						.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																																													.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	I	F	F	A	R	V	A	.	.	.	L	E	L	G	S	K	K	F	E	K	G	M	K	K	L	G	V	G	E	D	I	P	S	D	Y	P	F	Y	N	A	Q	I	S	N	N	L	D	N	E	I	L	L	A	D	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																T	T	T	S				S	S	S						B	S				T	T	S							.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.																																													.	.	.
Template SS confidence
																							463	.	.	.	.	.	.	470	.				.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.														.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	S	P	C	N	N	T	L	A	A	I	G	S	G	G	V	Y	S	T	P	G	D	M	M	R	W	M	Q	Q	Y	L	S	S	D	F	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	S	N	Q	A	D	R	M	Q	T	L	I	Y	Q	R	A	Q	F	T	K	V	I	G	M	D	V	P	G	K
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	S	G	Y	G	Q	G	E	I	L	I	N	P	V	Q	I	L	S	I	Y	S	A	L	E	N	N	G	N	I	N	A	P	H	L	L	K	D	T	K	N	K	V	W	K	K	N	I	I	S	K	E	N	I	N	L	L	T	D	G	M	Q	Q	V	V	N	K	T	H	K	E	D	I
Template Known Secondary structure		.	.	.	.	.	.	.	.	.		T	T	T		S	S		B	B											G	G	G	T	T	T						B		B	S	S	S							S		S	S																		T	T	T	T	T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Template SS confidence
											517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.			.	.	.	.	350	.	.					.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.								.	.	.	.
Query SS confidence																																											.	.								.	.	.	.
Query Sequence		A	D	A	L	G	L	G	W	V	Y	M	A	P	K	E	G	R	P	G	I	I	Q	K	T	G	G	G	G	G	F	I	T	Y	M	A	M	I	P	Q	K	N	.	.	I	G	A	F	V	V	V	.	.	.	.	T	R	S	P	L	T	R	F	K	N	M	S	D	G	I	N	D	L	V	T	E	L	S	G	N	K
Query Conservation																																											.	.								.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.								.	.	.	.																							.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	S	Y	A	N	L	I	G	K	S	G	T	A	E	L	Q	I	G	W	F	I	S	Y	D	K	D	N	P	N	M	M	M	A	I	N	V	K	D	V	Q	D	K	G	M	A	S	Y	N	A	K	I	S	G	K	V	Y	D	E	L	Y	E	N	.	G	N	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S																					T	T	S		S											T	T	T	T	T																T	G	G	.	G	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																																																																.
Template SS confidence
															588	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650		.	.	.
		379	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	V	I	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Y	D	I	D
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		663	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions