Job Description P77700 Confidence 99.35% Date Thu Jan 5 12:31:50 GMT 2012 Rank 34 Aligned Residues 196 % Identity 8% Template c3kosA_ PDB info PDB header:transcription Chain: A: PDB Molecule:hth-type transcriptional activator ampr; PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii Resolution 1.83 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	V	R	I	C	I	N	Q	L	L	Y	T	P	K	H	T	A	R	L	L	Q	V	L	K	K	Q	F	P	T	C	Q	I	T	V	T	T	E	V	Y	N	G	V	W	D	A	I	I	N	N	Q	A	N	I	A	I	G	A	P	D	T	L	L	D	G	G	G	I	D	Y	T	E	I	G	A	I	R	W	A
Query Conservation
Alig confidence																																																.	.	.	.										.	.
Template Conservation																																																.	.	.	.										.	.
Template Sequence		Q	E	K	L	K	I	G	V	V	G	T	F	A	I	G	C	L	F	P	L	L	S	D	F	K	R	S	Y	P	H	I	D	L	H	I	S	T	H	N	N	R	V	D	P	A	A	.	.	.	.	E	G	L	D	Y	T	I	R	Y	.	.	G	G	G	A	W	H	D	T	D	A	Q	Y	L	C	S	A	L	X	S
Template Known Secondary structure																	T													T	T										S							.	.	.	.		T		S						.	.			S			T	T
Template Predicted Secondary structure																																																.	.	.	.										.	.
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.					.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.					.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		F	A	I	A	P	D	H	P	L	A	F	V	P	E	P	I	A	E	S	Q	L	R	L	Y	P	N	I	M	V	E	D	T	A	H	T	I	N	K	K	V	G	W	L	.	.	.	.	L	H	G	Q	E	S	I	L	V	P	D	F	N	T	K	C	Q	C	Q	I	L	G	E	G	I	G	F	L	P	D	Y	M	V
Query Conservation																																													.	.	.	.
Alig confidence													.	.	.	.																													.	.	.	.
Template Conservation													.	.	.	.
Template Sequence		P	L	C	S	P	T	L	A	S	Q	I	.	.	.	.	Q	T	P	A	D	I	L	K	F	P	L	L	R	S	Y	R	R	D	E	W	A	L	W	X	Q	T	V	G	E	A	P	P	S	P	T	H	N	V	X	V	F	D	S	S	V	T	X	L	E	A	A	Q	A	G	X	G	V	A	I	A	P	V	R	X	F
Template Known Secondary structure				B						T	T		.	.	.	.	S	S	G	G	G	G	G	G	S						S		T	T									T	T						T	T	S						S											T	T	S		B					G	G	G
Template Predicted Secondary structure													.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	A	M	T	Q	S	L	L	V	T	R	Q	I	H	N	P	R	Q	D	S	R	M	L	L	A	T	Q	H	S	A	T	G	Q	V	T	Q	W	I	K	K	Q	F	A	P	N	G	I	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	H	L	L	S	S	E	R	I	V	Q	P	F	L	T	Q	I	D	L	G	S	Y	W	I	T	R	L	Q	S	R	P	E	T	P	A	X	R	E	F	S	R	W	L	T	G	V	L	H	K	T
Template Known Secondary structure							T	T	S	S	B							B		S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions