Job Description P77700 Confidence 99.67% Date Thu Jan 5 12:31:50 GMT 2012 Rank 16 Aligned Residues 194 % Identity 11% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

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		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	V	R	I	C	I	N	Q	L	L	Y	T	P	K	H	T	A	R	L	L	Q	V	L	K	K	Q	F	P	T	C	Q	I	T	V	T	T	E	V	Y	N	G	V	W	D	A	I	I	N	N	Q	A	N	I	A	I	G	A	P	D	T	L	L	D	G	G	G	I	D	Y	T	E	I	G	A	I	R	W	A
Query Conservation
Alig confidence																					.																																								.	.
Template Conservation																					.																																								.	.
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	Y	L	L	P	K	.	L	I	V	S	L	R	R	T	A	P	K	X	P	L	X	L	E	E	N	Y	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	A	.	.	E	P	F	Q	E	P	G	I	V	T	E	P	L	Y	D	E	P	F	F
Template Known Secondary structure											T	T	T								.										T	T																			T	T	S	S	S						.	.	S	S				T	T
Template Predicted Secondary structure																					.																																								.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.		.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	I	A	P	D	H	P	L	A	F	V	P	E	P	I	A	E	S	Q	L	R	L	Y	P	N	I	M	V	E	D	T	A	H	T	I	N	K	K	V	G	W	L	L	H	G	Q	E	S	I	L	V	P	D	F	N	T	K	C	Q	C	Q	I	L	G	E	G	I	G	F	L	P	D	Y	M	V	R	E	A	M
Query Conservation
Alig confidence													.																																.	.	.
Template Conservation													.																																.	.	.
Template Sequence		V	I	V	P	K	G	H	S	F	E	E	.	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	.	.	.	T	N	T	L	Q	G	S	S	I	N	T	I	R	H	X	V	A	S	G	L	A	I	S	V	L	P	A	T	A	L	T	E	N	D
Template Known Secondary structure						T	T		G	G	G	G	.		S	S			S	S	G	G	G	G	S							T	T									T	T		.	.	.							S	S										T	T	S							G	G	G			G	G	G
Template Predicted Secondary structure													.																																.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.		.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		T	Q	S	L	L	V	T	R	Q	I	H	N	P	R	Q	D	S	R	M	L	L	A	T	Q	H	S	.	A	T	G	Q	V	T	Q	W	I	K	K	Q	F	A	P	N
Query Conservation																												.
Alig confidence					.																							.
Template Conservation					.
Template Sequence		H	X	L	.	F	S	I	I	P	F	E	G	T	P	P	S	R	R	V	V	L	A	Y	R	R	N	F	V	R	P	K	A	L	S	A	X	K	A	A	I	X	Q	S
Template Known Secondary structure		G	G	T	.							S	S	S												T	T																T	S
Template Predicted Secondary structure					.
Template SS confidence
		255	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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