Job Description P77700 Confidence 100.00% Date Thu Jan 5 12:31:50 GMT 2012 Rank 7 Aligned Residues 277 % Identity 16% Template c3fzvC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Resolution 2.71 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	I	F	T	E	E	N	L	L	A	F	T	T	A	A	R	F	G	S	F	S	K	A	A	E	E	L	G	L	T	T	S	A	I	S	Y	T	I	K	R	M	E	T	G	L	D	V	V	L	F	T	R	S	T	R	S	I	E	L	T	E	S	G	R	Y	F	F	R	K	A	T	D	L	L	N	D	F	Y	A	I
Query Conservation
Alig confidence				.																																																																							.	.	.	.	.	.	.
Template Conservation				.																																																																							.	.	.	.	.	.	.
Template Sequence		S	Y	.	T	L	R	Q	L	K	Y	F	V	T	T	V	E	C	G	S	V	A	E	A	S	R	K	L	Y	I	A	Q	P	S	I	S	T	A	V	K	G	L	E	E	S	F	G	V	Q	L	F	S	L	T	P	A	G	A	R	F	Y	R	K	A	Q	E	L	L	R	X	A	H	E	F	.	.	.	.	.	.	.
Template Known Secondary structure				.															S	S								T	T																		T	S																										T	.	.	.	.	.	.	.
Template Predicted Secondary structure				.																																																																							.	.	.	.	.	.	.
Template SS confidence
		3	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	R	I	D	T	I	S	Q	G	I	E	A	R	V	R	I	C	I	N	Q	L	L	Y	T	P	K	H	T	A	R	L	L	Q	V	L	K	K	Q	F	P	T	C	Q	I	T	V	T	T	E	V	Y	N	G	V	W	D	A	I	I	N	N	Q	A	N	I	A	I	G	A	P	D	T	L	L	D	G	G	G	I
Query Conservation
Alig confidence		.	.	.	.	.	.																																																																	.	.
Template Conservation		.	.	.	.	.	.																																																																	.	.
Template Sequence		.	.	.	.	.	.	E	Q	N	D	V	I	A	G	Q	I	D	I	G	C	F	E	T	V	A	P	L	Y	L	P	G	L	I	A	G	F	R	Q	A	Y	P	G	V	E	I	R	I	R	D	G	E	Q	Q	E	L	V	Q	G	L	T	S	G	R	F	D	L	A	F	L	Y	.	.	E	H	D	L	D	S	T	I
Template Known Secondary structure		.	.	.	.	.	.																T	T	T																	T	T																				T	S		S						.	.	S	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.																																																																	.	.
Template SS confidence
								83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.			.	.	.	150	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.				.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.
Query SS confidence																																															.	.	.
Query Sequence		D	Y	T	E	I	G	A	I	R	W	A	F	A	I	A	P	D	H	P	L	A	F	V	P	E	P	I	A	E	S	Q	L	R	L	Y	P	N	I	M	V	E	D	T	A	H	.	.	.	T	I	N	K	K	V	G	W	L	L	H	G	Q	E	S	I	L	V	P	D	F	N	T	K	C	Q	C	Q	I	L	G	E
Query Conservation																																															.	.	.
Alig confidence																																															.	.	.
Template Conservation
Template Sequence		E	T	E	P	L	X	P	P	Q	R	P	H	A	L	L	P	E	G	H	R	F	A	G	Q	A	Q	V	S	L	R	D	L	C	L	E	P	X	I	L	L	D	V	Q	P	S	R	T	Y	F	V	S	L	F	E	E	L	G	L	T	P	N	I	A	F	S	S	P	S	I	E	X	V	R	G	X	V	G	Q	G	F
Template Known Secondary structure						S	S			B								T	T		T	T	T	T	S	S								T	T	S								T	T												T	T										S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.		.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure																			.																										.
Query SS confidence																			.																										.
Query Sequence		G	I	G	F	L	P	D	Y	M	V	R	E	A	M	T	Q	S	.	L	L	V	T	R	Q	I	H	N	P	R	Q	D	S	R	M	L	L	A	T	Q	H	S	A	T	.	G	Q	V	T	Q	W	I	K	K	Q	F	A	P	N
Query Conservation																			.																										.
Alig confidence																			.																										.
Template Conservation
Template Sequence		G	F	S	L	L	V	T	R	P	H	S	E	C	T	Y	D	G	K	K	V	V	X	V	D	L	A	E	P	V	S	T	S	G	L	A	A	A	W	L	K	R	A	Q	L	T	K	P	A	R	L	F	V	D	Y	C	R	E	Q
Template Known Secondary structure			B								S			B		T	T	S		B							S	S				B									S	S	S
Template Predicted Secondary structure
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions