Job Description P77700 Confidence 99.61% Date Thu Jan 5 12:31:50 GMT 2012 Rank 22 Aligned Residues 198 % Identity 15% Template c2ql3G_ PDB info PDB header:transcription Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein; PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1 Resolution 2.05 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	R	V	R	I	C	I	N	Q	L	L	Y	T	P	K	H	T	A	R	L	L	Q	V	L	K	K	Q	F	P	T	C	Q	I	T	V	T	T	E	V	Y	N	G	V	W	D	A	I	I	N	N	Q	A	N	I	A	I	G	A	P	D	T	L	L	D	G	G	G	I	D	Y	T	E	I	G	A	I	R	W	A
Query Conservation
Alig confidence																					.																																								.	.
Template Conservation																					.																																								.	.
Template Sequence		A	G	P	I	A	V	G	C	Y	P	A	L	G	P	T	I	L	P	S	.	X	L	Y	A	F	T	A	E	Y	P	R	A	S	V	E	F	R	E	D	T	Q	N	R	L	R	T	Q	L	E	G	G	E	L	D	V	A	I	V	Y	.	.	D	L	D	L	S	P	E	W	Q	T	V	P	L	X	T	R	E	P	X
Template Known Secondary structure											G	G	G	T	T	T	T				.										T	T																				T	S		S						.	.	S	S	S			S	S
Template Predicted Secondary structure																					.																																								.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		F	A	I	A	P	D	H	P	L	A	F	V	P	E	P	I	A	E	S	Q	L	R	L	Y	P	N	I	M	V	E	D	T	A	H	T	I	.	.	.	N	K	K	V	G	W	L	L	H	G	Q	E	S	I	L	V	P	D	F	N	T	K	C	Q	C	Q	I	L	G	E	G	I	G	F	L	P	D	Y	M	V	R
Query Conservation																																						.	.	.
Alig confidence																																						.	.	.
Template Conservation
Template Sequence		V	V	L	G	A	E	H	P	L	A	G	V	D	G	P	V	R	L	A	D	L	A	E	H	P	X	V	L	L	D	A	P	P	S	T	N	H	A	X	D	V	C	R	E	A	G	F	A	P	R	V	A	Y	R	T	A	N	F	E	T	A	R	A	F	V	G	R	G	L	G	W	T	L	L	L	Q	R	P	R	V
Template Known Secondary structure						T	T	S	T	T	T	T	S		S		B		G	G	G	G	T	T	S								T	T												T	T										S												T	S		B				S				S	S
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
		251	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.		.	.	.	.	.	.	.	.	290	.	.	.	.
Predicted Secondary structure									.												.														.
Query SS confidence									.												.														.
Query Sequence		E	A	M	T	Q	S	L	.	L	V	T	R	Q	I	H	N	P	R	Q	.	D	S	R	M	L	L	A	T	Q	H	S	A	T	.	G	Q	V	T	Q	W	I	K	K	Q	F	A	P
Query Conservation									.												.														.
Alig confidence									.												.														.
Template Conservation
Template Sequence		D	V	T	Y	E	G	L	P	V	V	V	K	P	I	A	E	P	K	P	A	S	V	A	V	V	V	A	W	H	Q	E	A	T	L	S	R	V	A	R	A	F	I	R	F	V	T	A
Template Known Secondary structure			B		T	T	S		B						B		S	S													T	T															T
Template Predicted Secondary structure
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions