Job Description P37177 Confidence 95.57% Date Thu Jan 5 11:54:54 GMT 2012 Rank 95 Aligned Residues 155 % Identity 9% Template c3qp5C_ PDB info PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) Resolution 3.25 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.					.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.				.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																																.	.	.	.																		.	.	.
Query SS confidence																																																.	.	.	.																		.	.	.
Query Sequence		L	T	R	L	R	E	I	V	E	K	V	A	S	A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	.	.	.	.	R	C	Y	Y	L	M	A	T	R	G	L	K	K	P	R	G	R	.	.	.	T	V	T	L	A	F	D	E	G	I
Query Conservation																																																.	.	.	.																		.	.	.
Alig confidence																							.																									.	.	.	.																		.	.	.
Template Conservation																							.
Template Sequence		Q	W	T	L	L	E	W	I	H	M	A	G	H	I	E	T	E	N	E	L	K	.	A	F	L	D	Q	V	L	S	Q	A	P	S	E	R	L	L	L	A	L	G	R	L	N	N	Q	N	Q	I	Q	R	L	E	R	V	L	N	V	S	Y	P	S	D	W	L	D	Q	Y	M	K	E	N	Y	A	Q	H	D	P	I
Template Known Secondary structure													T	S			S						.										S	S		S											T	T	S													S											T	T	T	T	T	T		T	T
Template Predicted Secondary structure																							.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.		.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.					.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence		V	G	L	V	G	R	L	A	E	P	I	N	L	A	D	A	Q	K	H	P	S	F	K	Y	.	.	.	.	I	P	S	V	K	E	E	R	F	R	A	F	L	G	V	P	I	I	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L	R	Q	Y	D	E	S	E	E	S	F	L	V	T	L	A	T	Q	M
Query Conservation																										.	.	.	.
Alig confidence			.																							.	.	.	.
Template Conservation			.
Template Sequence		L	.	R	I	H	L	G	Q	G	P	V	M	W	E	E	R	F	N	R	A	K	G	A	E	E	K	R	F	I	A	E	A	T	Q	N	G	M	G	S	G	I	T	F	S	A	A	S	E	R	N	N	I	G	S	I	L	S	I	A	G	R	E	P	G	R	N	A	A	L	V	A	M	L	N	C	L	T	P	H	L
Template Known Secondary structure		T	.	T	S		T	T	S	S									S	S														T	T	T	T	T	T	S									T	T	T	T									S	T	T	G	G	G
Template Predicted Secondary structure			.
Template SS confidence
		100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	I	L	S	Q	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	Q	A	A	I	R	V	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions