Job Description P37177 Confidence 99.81% Date Thu Jan 5 11:54:54 GMT 2012 Rank 23 Aligned Residues 166 % Identity 14% Template c3k2nB_ PDB info PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.
Query SS confidence																																																												.	.
Query Sequence		L	T	R	L	R	E	I	V	E	K	V	A	S	A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	R	C	Y	Y	L	M	A	T	R	G	L	K	.	.	K	P	R	G	R	T	V	T	L	A	F	D	E	G	I	V	G	L	V	G
Query Conservation																																																												.	.
Alig confidence																																																												.	.
Template Conservation
Template Sequence		L	K	L	X	Q	Y	I	G	D	A	I	G	T	I	R	D	P	Q	E	L	F	R	T	V	T	D	K	L	R	L	L	F	A	F	D	S	A	V	I	I	T	I	D	R	E	R	R	E	A	S	V	F	F	E	X	L	R	F	E	L	P	E	Q	L	R	H	Q	T	R	S	I	A	G	T	W	L	E	G	H	L
Template Known Secondary structure																														T	T	T				S									T	T	T	T										S	S				G	G	G			S					T	T	S	T	T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.						.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.
Query SS confidence																					.	.	.	.	.
Query Sequence		R	L	A	E	P	I	N	L	A	D	A	Q	K	H	P	S	F	K	Y	.	.	.	.	.	I	P	S	V	K	E	E	R	F	R	A	F	L	G	V	P	I	I	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L	R	Q	Y	D	E	S	E	E	S	F	L	V	T	L	A	T	Q	M	A	A	I	L
Query Conservation																					.	.	.	.	.
Alig confidence																					.	.	.	.	.
Template Conservation
Template Sequence		D	D	R	T	V	T	V	A	S	I	A	R	D	I	P	S	F	G	A	D	G	A	P	L	L	W	T	L	H	E	L	G	X	R	Q	I	V	L	S	P	L	R	S	G	G	R	V	I	G	F	L	S	F	V	S	A	E	E	K	L	W	S	D	G	D	K	S	L	L	S	G	V	S	S	S	I	A	I	A	V
Template Known Secondary structure		T			S						T	T	T	S		T	T	T	T	S	T	T										T	T												T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		155	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	S	Q	L	T	A	L	F	G	Q	Y	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	N	A	L	A	Y	E	E	L	R	Q	R	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions