Job Description P37177 Confidence 78.02% Date Thu Jan 5 11:54:54 GMT 2012 Rank 127 Aligned Residues 165 % Identity 8% Template c2q0oA_ PDB info PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.	.	.
Query SS confidence																																																																		.	.	.
Query Sequence		T	R	L	R	E	I	V	E	K	V	A	S	A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	R	C	Y	Y	L	M	A	T	R	G	L	K	K	P	R	G	R	T	V	.	.	.	T	L	A	F	D	E	G	I	V	G	L	V	G
Query Conservation																																																																		.	.	.
Alig confidence																					.																															.	.	.	.											.	.	.
Template Conservation																					.																															.	.	.	.
Template Sequence		G	N	L	R	S	L	I	D	M	L	E	A	A	Q	D	G	H	M	I	.	K	I	A	L	R	S	F	A	H	S	C	G	Y	D	R	F	A	Y	L	Q	K	D	G	T	Q	V	R	T	F	H	.	.	.	.	S	Y	P	G	P	W	E	S	I	Y	L	G	S	D	Y	F	N	I	D	P	V	L	A	E	A	K
Template Known Secondary structure																S					.												T											T	T							.	.	.	.		S											T	T	G	G	G	T
Template Predicted Secondary structure																					.																															.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.
Query SS confidence																				.	.	.	.	.
Query Sequence		R	L	A	E	P	I	N	L	A	D	A	Q	K	H	P	S	F	K	.	.	.	.	.	Y	I	P	S	V	K	E	E	R	F	R	A	F	L	G	V	P	I	I	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L	R	Q	Y	D	E	S	E	E	S	F	L	V	T	L	A	T	Q	M	A	A	I	L
Query Conservation																				.	.	.	.	.
Alig confidence																				.	.	.	.	.
Template Conservation
Template Sequence		R	R	R	D	V	F	F	W	T	A	D	A	W	P	A	R	G	S	S	P	L	R	R	F	R	D	E	A	I	S	H	G	I	R	C	G	V	T	I	P	V	E	G	S	Y	G	S	A	M	M	L	T	F	A	S	P	E	R	K	V	D	I	S	G	V	L	D	P	K	K	A	V	Q	L	L	M	M	V	H	Y
Template Known Secondary structure					S						S	T	T	S			S	S														T	T												G	G	G										S	S	S					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	S	Q	L	T	A	L	F	G	Q	Y	R	Q	T	R	I	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	L	K	I	I	A	A	K	T	V	L	N	P	K	Q	M	L	S
Template Known Secondary structure									T					G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions