 |
Job Description | P37177 | Confidence | 79.03% | Date | Thu Jan 5 11:54:54 GMT 2012 |
Rank | 123 | Aligned Residues | 84 |
% Identity | 15% | Template | c2infB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:uroporphyrinogen decarboxylase; |
PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 bacillus subtilis
|
Resolution | 2.30 Å |
|
 |
  |   |
647 | . | . | 650 | . | . | . | . | . | . | . | . | . | 660 | . | . | . | . | |
. | . | . | . | . | 670 | . | . | . | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | . | 690 | . | . | . | . | . | . | . | . | . | 700 | . | . | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  | . |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
M | L | R | A | L | A | M | I | A | R | E | A | E | I | H | G | I | D | . |
L | R | L | C | G | E | M | A | G | D | P | M | C | V | A | I | L | I | G | L | G | Y | R | H | L | S | M | N | G | R | S | V | A | R | A | K | Y | L | L | R | R | I | D | Y | A | E | A | E | N | L | A | Q | R | . |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . |
|   |
|
|
|
|   |
|   |   |
|   |   |   |   |   |
|   |
|
|
|   |   |   |
|
|   |   |   |   |   |
|   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |
|   |   |
|   |
|   |   |   |
|   |   |   |
|   |   |
|
|   |   |   |   | . | . | . |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |
|
|   |   |   |   |   |   |   |
|   |
|
|
|
|
Template Sequence |   |
I | K | P | V | M | N | R | I | F | S | E | L | A | K | E | N | V | P | L | I | M | F | G | V | . |
. |
. |
G | A | S | H | L | A | G | D | W | H | D | L | P | L | D | V | V | G | L | D | W | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
L | G | I | D | E | A | R | S | K | G | I | T | K | T | V | Q | G | N | L | D |
Template Known Secondary structure |   |
T |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|  |  |  |  |
| T | . | . | . | T |
| G | G | G |  |  |  |  |  | T | S | S |
| S |  |  |  |
|
| T | T | . | . | . | . | . | . | . | . | . | . | . | S |
|  |  |  |  |  |  | T | T |
|
| S |  |  |  |
|
| B |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
| . | . | . |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |
|
|
|  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
223 | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | |
|
|
. | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . |
  |
  |   |
|
718 | . | 720 | . | . | . | . | . | . | . | . | . | 730 | . | . | . | . | . | . | . | |
. | . | 740 | . | . | . | . |
Predicted Secondary structure |   |
. |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |
|
|
|
|
|
|
|
Query SS confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Query Sequence |   |
. |
S | L | E | A | Q | L | A | T | E | V | R | H | Q | V | A | A | F | M | E | R | . |
R | G | M | G | G | L | I |
Query Conservation |   |
. |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|   |
|
|   |
|
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|
|
|
Template Sequence |   |
P | S | I | L | L | A | P | W | E | V | I | E | Q | K | T | K | E | I | L | D | Q | G | M | E | S | D | G | F | I |
Template Known Secondary structure |   |
G | G | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S | S |
|  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
289 | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|