Job Description P37177 Confidence 33.41% Date Thu Jan 5 11:54:54 GMT 2012 Rank 202 Aligned Residues 139 % Identity 12% Template c1ysqA_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij Resolution 1.75 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.																			.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.																			.	.	.	.	.
Query Sequence		A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	R	C	Y	Y	L	M	A	T	R	G	L	K	K	P	R	G	R	T	V	.	.	.	.	.	T	L	A	F	D	E	G	I	V	G	L	V	G	R	L	A	E	P	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.																			.	.	.	.	.
Alig confidence																								.	.	.																												.	.	.	.	.																			.	.	.	.	.
Template Conservation																								.	.	.
Template Sequence		S	L	N	I	I	H	I	A	A	P	H	L	E	A	L	N	I	A	T	G	E	T	.	.	.	I	N	F	S	S	R	E	D	D	H	A	I	L	I	Y	K	L	E	P	T	T	G	M	L	R	T	R	A	Y	I	G	Q	H	M	P	L	Y	C	S	A	M	G	K	I	Y	M	A	F	G	H	P	D	Y	V	K
Template Known Secondary structure																						S		.	.	.								T	T											S	S						S			T	T					G	G	G										T	S
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.				.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
			85	.	.	.	.	90	.	.	.	.	.													.	.	.	.	100	.	.	.	.	.	.	.	.											.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure		.												.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.
Query SS confidence		.												.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.
Query Sequence		.	I	N	L	A	D	A	Q	K	H	P	S	.	.	.	.	.	.	.	.	.	.	.	.	F	K	Y	I	P	S	V	K	E	E	R	F	R	.	.	.	.	.	.	.	.	.	.	A	F	L	G	V	P	I	I	.	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L	R	Q	Y	D	E	S	E	E
Query Conservation		.												.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.
Alig confidence		.												.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.									.																		.
Template Conservation																																																																											.
Template Sequence		S	Y	W	E	S	H	Q	H	E	I	Q	P	L	T	R	N	T	I	T	E	L	P	A	M	F	D	E	L	A	H	I	R	E	S	G	A	A	M	D	R	E	E	N	E	L	G	V	S	C	I	A	V	P	V	F	D	I	H	G	R	V	P	Y	A	V	S	I	S	L	S	T	S	R	.	L	K	Q	V	G	E
Template Known Secondary structure							T	T	T	T				S	S	T	T				S															T						S	S	S	S	T	T											T	T	S			S												.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	L	V	T	L	A	T	Q	M	A	A	I	L	S	Q	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	L	L	K	P	L	R	E	T	A	Q	A	I	S	N	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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