Job Description P37177 Confidence 35.46% Date Thu Jan 5 11:54:54 GMT 2012 Rank 194 Aligned Residues 150 % Identity 11% Template c1mkmA_ PDB info PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr Resolution 2.20 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.					.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		R	L	R	E	I	V	E	K	V	A	S	A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	R	C	Y	Y	L	M	A	T	R	G	L	K	K	P	R	G	R	T	V	.	.	.	.	T	L	A	F	D	E	G	I	V	G	L	V	G
Query Conservation																																																																	.	.	.	.
Alig confidence																																			.	.	.																												.	.	.	.
Template Conservation																																			.	.	.
Template Sequence		K	L	I	E	Y	G	S	F	V	L	R	R	F	N	I	R	D	I	A	H	D	H	L	V	D	I	M	K	R	T	G	E	T	.	.	.	V	H	L	I	L	K	D	G	F	E	G	V	Y	I	D	K	V	E	G	E	Q	S	I	P	M	V	S	R	L	G	M	K	V	D	L	Y	S	T	A	S	G	K	S	I
Template Known Secondary structure																														T	T		S		.	.	.								S	S											T	T	S				S			S	S					S	S	S	S
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.				.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		80															.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.			.	.	.	100	.	.	.	.	.	.	.											.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.												.	.	.	.	.	.	.	.	.	.										.
Query SS confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.												.	.	.	.	.	.	.	.	.	.										.
Query Sequence		R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	E	P	I	N	L	A	D	A	Q	K	H	P	S	F	.	.	K	Y	I	P	S	V	K	E	E	R	F	.	.	.	.	.	.	.	.	.	.	R	A	F	L	G	V	P	I	I	.	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L
Query Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.												.	.	.	.	.	.	.	.	.	.										.
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.												.	.	.	.	.	.	.	.	.	.										.
Template Conservation
Template Sequence		L	A	F	V	P	E	K	E	L	K	E	Y	L	K	I	V	E	L	K	P	K	T	P	N	T	I	T	N	P	R	V	L	K	R	E	L	E	K	I	R	K	R	G	Y	A	V	D	N	E	E	N	E	I	G	I	M	C	V	G	V	P	I	F	D	H	N	G	Y	P	V	A	G	V	S	I	S	G	V	A	R
Template Known Secondary structure					S																	S	S	T	T																			S	S					S	S	S	S	T	T											T	T	S												G	G
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	Y	D	E	S	E	E	S	F	L	V	T	L	A	T	Q	M	A	A	I	L	S	Q	S
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		K	.	F	T	E	E	K	I	E	E	Y	S	D	V	L	K	E	K	A	E	E	I	S	R	K
Template Known Secondary structure		G	.
Template Predicted Secondary structure			.
Template SS confidence
		220		.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions