Job Description P37177 Confidence 86.52% Date Thu Jan 5 11:54:54 GMT 2012 Rank 103 Aligned Residues 175 % Identity 11% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	V	E	K	V	A	S	A	P	R	L	N	E	A	L	N	I	L	V	T	D	I	C	L	A	M	D	T	E	V	C	S	V	Y	L	A	D	H	D	R	R	C	Y	Y	L	M	A	T	R	G	L	K	K	P	R	G	R	T	V	T	L	A	F	D	E	G	I	V	G	L	V	G	R	L	A	E	P	I	N
Query Conservation
Alig confidence																																																																			.
Template Conservation																																																																			.
Template Sequence		D	K	L	T	D	L	A	A	I	E	G	D	E	C	I	L	K	T	G	L	A	D	I	A	D	H	F	G	F	T	G	Y	A	Y	L	H	I	Q	H	R	H	I	T	A	V	T	N	Y	H	R	Q	W	Q	S	T	Y	F	D	K	K	F	E	A	L	D	.	P	V	V	K	R	A	R	S	R	K	H	I	F	T
Template Known Secondary structure								T	T																				T		S									S	S								S											T	T	T	T	T	T		.								T			S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.						.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		L	A	D	A	Q	K	H	P	S	F	K	.	.	.	.	.	Y	I	P	S	V	K	E	E	R	F	R	A	F	L	G	V	P	I	I	Q	R	R	Q	L	L	G	V	L	V	V	Q	Q	R	E	L	R	Q	Y	D	E	S	E	E	S	F	L	V	T	L	A	T	Q	M	A	A	I	L	S	Q	S	Q	L	T	A
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.																																				.	.
Template Conservation																																																					.	.
Template Sequence		W	S	G	E	H	E	R	P	T	L	S	K	D	E	R	A	F	Y	D	H	A	S	D	F	G	I	R	S	G	I	T	I	P	I	K	T	A	N	G	F	X	S	X	F	T	X	A	S	D	K	P	.	.	V	I	D	I	D	A	V	A	A	A	A	T	I	G	Q	I	H	A	R	I	S	F	L	R	T	T	P
Template Known Secondary structure				S	S	T	T	T	T	S	S		S											T	T	T												G	G	G										S	S	S	.	.	S																					T	T	T
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	Q	Y	R	Q	T	R	I	R	A	L	P	A	A	P	G	V	A	I	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	V	G	K
Template Known Secondary structure		S		B																	T	T	T
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions