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35 | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
T | H | C | T | R | C | D | A | C | I | N | A | C | E | N | N | I | L | Q | R | G | A | G | G | Y | P | S | V | N | F | K | N | N | E | C | S | F | C | Y | A | C | A | Q | A | C | P | E | S | L | F | S | P | R | H | T | R | A | W | D | L | Q | F | T | I | G | D | A | C | L | A | Y | Q | S | V | E | C | R | R | C | Q |
Query Conservation |   |
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Alig confidence |   |
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| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
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Template Sequence |   |
D | S | C | I | A | C | G | A | C | K | P | E | C | P | V | N | C | I | Q | E | G | S | I | . |
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Template Known Secondary structure |   |
T | T |
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| T | T |
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| S | S | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Predicted Secondary structure |   |
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Template SS confidence |   |
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6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | |
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115 | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
D | S | C | E | P | M | A | I | I | F | R | P | T | L | S | G | I | Y | Q | P | Q | L | N | S | Q | L | C | N | G | C | G | A | C | A | A | S | C | P | V | S | A | I | T | A | E |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
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Alig confidence |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
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Template Conservation |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |
|   |   |   |   |
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Template Sequence |   |
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Y | A | I | D | A | D | S | C | I | D | C | G | S | C | A | S | V | C | P | V | G | A | P | N | P | E |
Template Known Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
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| T | T | T |
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| T | T |
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Template Predicted Secondary structure |   |
. | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |
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Template SS confidence |   |
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29 | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . |
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