 |
Job Description | P0AAL0 | Confidence | 96.93% | Date | Thu Jan 5 11:13:12 GMT 2012 |
Rank | 57 | Aligned Residues | 79 |
% Identity | 23% | Template | c2bs2E_ |
PDB info |
PDB header:oxidoreductase | Chain: E: PDB Molecule:quinol-fumarate reductase iron-sulfur subunit b; |
PDBTitle: quinol:fumarate reductase from wolinella succinogenes
|
Resolution | 1.78 Å |
|
 |
  |   |
5 | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
A | S | R | R | G | I | L | T | G | R | W | R | K | A | S | N | G | I | R | P | P | W | S | G | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
E | S | H | F | L | T | H | C | T | R | C | D | A | C | I | N | A | C | E | N | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|   |   |
|
|   |   |
|
|
|
|
|   |
|
|   |
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |
|   |   |   |
|
|   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
V | D | T | G | N | W | F | N | G | M | S | Q | R | V | E | S | W | I | H | A | Q | K | E | H | D | I | S | K | L | E | E | R | I | E | P | E | V | A | Q | E | V | F | E | L | D | R | C | I | E | C | G | C | C | I | A | A | C | G | T | K | I | M | R | E | D | F | V | G | A | A | G | L | N | R | V | V | R | F | M | I |
Template Known Secondary structure |   |
 |  |
|  |  |  |  |  |  |  |  |  |  | T | T |
| S |
|
|
| S | S |
|
|
| T | T | S |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | T |
|
|
|
|
|  |  |  |  | T |
|  |  |  |  |  |
| T | T |
|
|  |  |  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
105 | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . |
  |
  |   |
|
|
|
|
50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
. | . | . | . |
|
|  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
. |
. |
. |
. |
N | I | L | Q | R | G | A | G | G | Y | P | S | V | N | F | K | N | N | E | C | S | F | C | Y | A | C | A | Q | A | C | P | E | S | L |
Query Conservation |   |
. | . | . | . |   |
|
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
|
Alig confidence |   |
. | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |
|   |   |
|
|
|   |
|
|
Template Sequence |   |
D | P | H | D | E | R | T | D | E | D | Y | Y | E | L | I | G | D | D | D | G | V | F | G | C | M | T | L | L | A | C | H | D | V | C | P | K | N | L |
Template Known Secondary structure |   |
| T | T |
|
|
|
|  |  |  |  |  |  |  |  |
| S | T | T | T | G | G | G |
|
|
|
|
|  |  |  |  |  |
| T | T |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
185 | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|