Job Description P0A9N4 Confidence 99.01% Date Thu Jan 5 11:10:48 GMT 2012 Rank 13 Aligned Residues 165 % Identity 12% Template c2qgqF_ PDB info PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Resolution 2.00 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.																						.	.	.
Query SS confidence																																																				.	.	.	.	.	.																						.	.	.
Query Sequence		C	L	Y	C	H	N	R	D	T	W	D	T	H	G	G	K	E	V	T	V	E	D	L	M	K	E	V	V	T	Y	R	H	F	M	N	A	S	G	G	G	V	T	A	S	G	G	E	A	I	L	.	.	.	.	.	.	Q	A	E	F	V	R	D	W	F	R	A	C	K	K	E	G	I	H	T	C	L	.	.	.
Query Conservation																																																				.	.	.	.	.	.																						.	.	.
Alig confidence									.	.																									.	.	.															.	.	.	.	.	.																						.	.	.
Template Conservation									.	.																									.	.	.
Template Sequence		R	P	Y	A	Y	V	K	.	.	I	S	D	G	S	L	R	S	R	S	I	E	D	I	T	R	E	V	E	D	L	L	K	E	.	.	.	G	K	K	E	I	I	L	V	A	Q	D	T	T	S	Y	G	I	D	L	Y	R	K	Q	A	L	P	D	L	L	R	R	L	N	S	L	N	G	E	F	W	I	R	V	X
Template Known Secondary structure			S						.	.		B						B																T	.	.	.	T									S		G	G	G	T	T	T	T	T	T	S	S												T	S	S	S	S
Template Predicted Secondary structure									.	.																									.	.	.
Template SS confidence
		137	.	.	140	.	.	.			.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180
Predicted Secondary structure																					.	.																				.																																	.
Query SS confidence																					.	.																				.																																	.
Query Sequence		D	T	N	G	F	V	R	R	Y	D	P	V	I	D	E	L	L	E	V	.	.	T	D	L	V	M	L	D	L	K	Q	M	N	D	E	I	H	Q	N	L	.	V	G	V	S	N	H	R	T	L	E	F	A	K	Y	L	A	N	K	N	V	K	V	W	I	R	Y	V	V	V	P	G	W	.	S	D	D	D	D	S
Query Conservation																					.	.																				.																																	.
Alig confidence																					.	.																				.																																	.
Template Conservation
Template Sequence		Y	L	H	P	D	H	L	T	E	E	I	I	S	A	X	L	E	L	D	K	V	V	K	Y	F	D	V	P	V	Q	H	G	S	D	K	I	L	K	L	X	G	R	T	K	S	S	E	E	L	K	K	X	L	S	S	I	R	E	R	F	P	D	A	V	L	R	T	S	I	I	V	G	F	P	G	E	T	E	E	D
Template Known Secondary structure					G	G	G													T	T	B		S							B		S									T			S																	T	T										S		T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	R	L	G	E	F	T	R	D	M	G	N	V	E	K	I	E	L	L	P	Y	H	E
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		F	E	E	L	K	Q	F	V	E	E	I	Q	.	F	D	K	L	G	A	F	V	Y	S	D
Template Known Secondary structure														.		S
Template Predicted Secondary structure														.
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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