Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGC5
Confidence32.29%DateThu Jan 5 11:28:45 GMT 2012
Rank219Aligned Residues181
% Identity16%Templated1y9ua_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.39

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6970.........80......... 90.........100.........110.........120 ...
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Query Sequence  ELAKQFADYLGVKLKVTVRQN. . ISQLFDDLDNGNADLLAAGLVYNSERVKNYQ. . . . . . . . . . . . . . . . . . . . . . . PGP
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Template Sequence  PLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKSPADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWY
Template Known Secondary structure 


SS
GGG



STT




S
GGGB
GGGS
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   21........30.........40.........50.........60.........70.........80.........90.........100
 
   124.....130......... 140....... ..150.........160.........170..... ....180......
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Query Sequence  TYYSVSQQLVYKVGQY. RPRTLGNL. . . . . TAEQLTVAPGHVVVNDLQTLKETKFPEL. . . . . . . . . . . SWKVDDKKGSA
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Template Sequence  ALSLRDRVLYVEKDLKLDSFRYGDLADPKWKGKVCIRSGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDR
Template Known Secondary structure  TT





BGGGGG
GGGTT



TTS
BSS
S
S
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   101........110.........120.........130.........140.........150.........160.........170.........180
 
   187..190.........200.........210...... ...220.........230........ .240.........
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Query Sequence  ELMEDVIEGKLDYTIADSVAISLFQRVHPE. . . . . . . . . . . . . LAVALDITDEQPVTWFSPLDGD. NTLSAALLDFF
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Template Conservation          
                                        
         
   
   


  

 

Template Sequence  DVARDILGGICDIGLANAYYVGHMKNAEPGTDARKWGDAIKVVRPTFAGGTHVNISGAAVAAHAPNKANAVKLLEYL
Template Known Secondary structure  TTS
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TTST

B



B
TT
TT
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   181........190.........200.........210.........220.........230.........240.........250.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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