Job Description P0AGC5 Confidence 98.72% Date Thu Jan 5 11:28:45 GMT 2012 Rank 57 Aligned Residues 213 % Identity 8% Template d1xs5a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.85

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	E	T	V	G	V	G	V	L	S	E	P	H	A	.	.	.	.	.	.	.	.	.	.	R	L	L	E	I	A	K	E	E	V	K	K	Q	H	I	E	L	R	I	V	E	F	T	N	Y	V	A	L	N	E	A	V	M	R	G	D	I	L	M	N	F	F	Q	H	V	P	H	M	Q	Q	F	N	Q	E	H
Template Known Secondary structure												S	T	T			.	.	.	.	.	.	.	.	.	.												T	T	T									S												T	S	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.											20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
		121	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																	.	.	.	.	.	.	180	.	.
Predicted Secondary structure					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	G	P	.	.	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	S	W	K	V	D	D	K
Query Conservation					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	G	D	L	V	S	V	G	N	V	H	V	E	P	L	A	L	Y	S	R	T	Y	R	H	V	S	D	F	P	A	G	A	V	I	A	I	P	N	D	S	S	N	E	A	R	A	L	R	L	L	E	A	A	G	F	I	R	M	R	A	G	S	G	L	F	A	T	V	E	D	V	Q	Q	N	V	R	N	V	V	L
Template Known Secondary structure		T																			S	S			S	G	G	G			T	T								S														T	T	S					T	T			T	T			G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
Predicted Secondary structure																																			.																						.
Query SS confidence																																			.																						.
Query Sequence		K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	.	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R
Query Conservation																																			.																						.
Alig confidence																																			.																						.														.	.	.	.
Template Conservation																																																																							.	.	.	.
Template Sequence		Q	E	V	E	S	A	L	L	P	R	V	F	D	Q	V	D	G	A	V	I	N	G	N	Y	A	I	M	A	G	L	S	A	R	R	D	G	L	A	V	E	P	D	A	S	A	Y	A	N	V	L	V	V	K	R	G	N	E	A	D	A	R	V	Q	A	V	L	R	A	L	.	.	.	.	C	G	G	R	V	R	T
Template Known Secondary structure						G	G	G					G	G	G	S	S												T	T			T	T	T	T		S				S		G	G	G	G								T	T		T	T												.	.	.	.	T	S
Template Predicted Secondary structure																																																																							.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.					.	.	.	.	.	.	230
		261	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	E	K	Y	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	K	E	R	Y	K
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		231	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions