Return to main results Retrieve Phyre Job Id

Job DescriptionP0AGC5
Confidence99.98%DateThu Jan 5 11:28:45 GMT 2012
Rank13Aligned Residues227
% Identity16%Templated1pb7a_
SCOP infoPeriplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like
Resolution1.35

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3940......... 50.........60... ......70.........80........ .90...
Predicted Secondary structure 

..









.......




................
Query SS confidence 










. .













. . . . . . .
























. . . . . . . . . . . . . . . .




Query Sequence  IQARGELRVST. . IHTPLTYNEINGKP. . . . . . . FGLDYELAKQFADYLGVKLKVTVRQ. . . . . . . . . . . . . . . . NISQL
Query Conservation 
   
 


 
..   
  
    
  ....... 
 
 

   

  


 


    ................    
Alig confidence 










..













.......
























................




Template Conservation      
           
                  
  


   

  

   
   
 
   
            
   
Template Sequence  TMSDGTCKEEFTVNGDPVKKVICTGPNHTVPQCCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGM
Template Known Secondary structure 

TTSS



B
TTS
B




ST


TT





TTSS

Template Predicted Secondary structure 
















































Template SS confidence 















































































   22.......30.........40.........50.........60.........70.........80.........90.........100.
 
   94.....100.........110.........120.........130......... 140........ .150.........160........
Predicted Secondary structure 






















.




....





Query SS confidence 













































.








. . . .



















Query Sequence  FDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQY. RPRTLGNLT. . . . AEQLTVAPGHVVVNDLQTLK
Query Conservation 
  
  

 


 
 

 
 

     

 

      

      . 
  
 

 ....
  
 
  


    
  
 
Alig confidence 













































.








....



















Template Conservation 
  
  
  

       
 

     

 

        
                       
               
Template Sequence  MGELLSGQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGTRITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQV
Template Known Secondary structure  TS
S
SS
B

TT
S
STT



STT
S
BTTB

BTTST
G
Template Predicted Secondary structure 































Template SS confidence 















































































   110.........120.........130.........140.........150.........160.........170.........180.........
 
   169170.........180.........190.........200.........210.........220.........230.........240........
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  ETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDF
Query Conservation      
 
   
    
  


  
  



  
 
           
 
 
   
      
 
  
  
  
  


  
Alig confidence 





































































..







Template Conservation                         
  
  

 
                             

  
 
 ..
   

 
Template Sequence  ELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRKDSP. . WKQNVSLS
Template Known Secondary structure  GGTTT
BSSTTS
S
TT
SS
S

TT
S..S
Template Predicted Secondary structure 























..
Template SS confidence 















































































   190.........200.........210.........220.........230.........240.........250......... 260.......
 
   249250.........260.......
Predicted Secondary structure 




Query SS confidence 


















Query Sequence  FNEMNEDGTLARIEEKYLG
Query Conservation 
  

 



  
  



Alig confidence 


















Template Conservation 
  
   
 
  
  

 
Template Sequence  ILKSHENGFMEDLDKTWVR
Template Known Secondary structure  SSTS
Template Predicted Secondary structure 



Template SS confidence 


















   268.270.........280......
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions