Job Description P0AGC5 Confidence 96.54% Date Thu Jan 5 11:28:45 GMT 2012 Rank 104 Aligned Residues 197 % Identity 14% Template d1i6aa_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 2.30

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	.	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q
Query Conservation																																							.
Alig confidence																.	.	.	.	.	.	.	.	.															.											.																								.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																										.																								.	.	.	.
Template Sequence		S	G	P	L	H	I	G	L	I	P	T	V	G	P	.	.	.	.	.	.	.	.	.	Y	L	L	P	H	I	I	P	M	L	H	Q	T	F	P	K	L	E	M	Y	L	H	E	A	Q	.	T	H	Q	L	L	A	Q	L	D	S	G	K	L	D	A	V	I	L	A	L	V	K	E	.	.	.	.	S	E	A	F
Template Known Secondary structure											T	T	T			.	.	.	.	.	.	.	.	.															T	T										.											T	S		S								G	G	.	.	.	.	G	T	T	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																										.																								.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	.	.	.	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		I	E	V	P	L	F	D	E	P	M	L	L	A	I	Y	E	D	H	P	W	A	N	R	E	A	V	P	M	A	D	L	A	G	E	K	L	L	M	L	E	D	G	H	C	L	R	D	Q	A	M	G	F	C	F	E	A	G	A	D	E	D	T	H	F	R	A	T	S	L	E	T	L	R	N	M	V	A	A	G	S
Template Known Secondary structure																	T	T	S	G	G	G	G		S				G	G	G	G	T	T	S						T	T	T	T		S	S		T	T	S	S		S	S		T	T	S					T	T	T	T	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E
Query Conservation
Alig confidence																																												.	.
Template Conservation																																												.	.
Template Sequence		G	I	T	L	L	P	A	L	A	V	P	P	E	R	K	R	D	G	V	V	Y	L	P	A	I	K	P	E	P	R	R	T	I	G	L	V	Y	R	P	G	S	P	.	.	L	R	S	R	Y	E	Q	L	A	E	A	I	R	A
Template Known Secondary structure			B					G	G	G	S		S	S	S			T	T								S	S												T	T		T	.	.	T
Template Predicted Secondary structure																																												.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.			.	.	280	.	.	.	.	.	.	.	.	.	290	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions