Job Description P0AGC5 Confidence 79.55% Date Thu Jan 5 11:28:45 GMT 2012 Rank 171 Aligned Residues 246 % Identity 15% Template c3rpwA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 Resolution 1.65 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.
Predicted Secondary structure																																																		.															.	.				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																		.															.	.				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	.	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	.	.	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																		.															.	.				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.																										.															.	.				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.	.	.	.	.	.	.
Template Sequence		Q	S	N	V	V	I	X	Q	D	P	G	G	G	Y	G	.	.	.	.	.	.	.	.	D	A	L	R	K	V	X	Y	D	P	F	E	K	E	T	G	I	K	V	V	T	V	Q	E	A	R	S	G	P	R	I	K	A	Q	A	E	A	G	K	A	Q	W	D	L	T	F	I	F	D	Q	E	T	K	L	L	G	D
Template Known Secondary structure				S													.	.	.	.	.	.	.	.							T									S									S													T					S	B											T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.									.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
																106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.							.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.								.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.								.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	.	.	.	.	P	R	T	L	G	N	L	.	.	.	.	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.								.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.								.	.	.	.	.	.
Template Conservation
Template Sequence		C	C	L	A	D	I	D	Y	S	K	L	S	E	S	A	H	K	T	L	A	A	X	P	D	N	L	K	R	K	K	G	V	A	L	Q	V	I	G	V	G	L	V	Y	N	K	D	K	F	K	G	D	K	A	P	Q	T	W	A	D	F	W	D	V	K	K	F	P	G	R	R	C	X	P	A	W	P	R	F	T	F
Template Known Secondary structure				B					G	G	G	S										T	S		G	G	G			T	T															T	T	T	S		T	T	S	S			S							T	T	T	S		S						S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.																	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	L	Q	T	L	K	E	T	K	F	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	A	A	L	X	A	D	G	V	T	K	D	K	L	Y	P	I	D	X	D	R	A	L	K	K	L	K	E	I	K	P	H	V	V	K	W	W	T	T	A	A	Q	P	P	Q	L	I	L	D	G	E	A	D	X	C	L	A	Y	T	G	S	X	S	K	L	A	L	E	G	A	P	I	D	L	T	F	N	Q	G	F
Template Known Secondary structure								T	T			T	T	S			S														G	G	G							S	T	T								T	T	S		S																T		S
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G	H	G	D	D	F	D	Y	V	D	T	R	T	F	L	R	A	V	D	A	V	L	P	Q	L	K	P	L	F	E	K
Query Conservation
Alig confidence																.	.												.
Template Conservation																.	.												.
Template Sequence		V	Y	Y	D	F	F	S	I	P	K	G	A	P	N	.	.	Y	D	N	A	L	K	L	L	S	W	R	.	L	D	P	K	R	A	A	Q	L	T	S	T	F	P	V	A	L	P	S	K	V	V	F	D	A	A	T	D	K	N	I	A	R	Y	W	A	N	N	P	E	N	V	A	K
Template Known Secondary structure										B	T	T		T	T	.	.												.	T												S			B		S									S		G	G	G	G	G	G	S	T	T	S
Template Predicted Secondary structure																.	.												.
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.		.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions