Job Description P0AGC5 Confidence 94.70% Date Thu Jan 5 11:28:45 GMT 2012 Rank 120 Aligned Residues 205 % Identity 13% Template c3pppA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc Resolution 2.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		69	70	.	.	.	.	.	.		.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																										.	.	.	.	.	.	.	120	.
Predicted Secondary structure										.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	L	A	K	Q	F	A	D	.	Y	L	G	V	K	L	K	V	T	V	.	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	V	K	N	Y	Q	P
Query Conservation										.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.											.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G	K	E	A	E	K	D	P	K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F
Template Known Secondary structure													S											S										T	T	S		S													T	T	S
Template Predicted Secondary structure
Template SS confidence
		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure																				.	.	.									.	.	.	.
Query SS confidence																				.	.	.									.	.	.	.
Query Sequence		G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	.	.	R	P	R	T	L	G	N	L	.	.	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E
Query Conservation																				.	.	.									.	.	.	.
Alig confidence																				.	.	.									.	.	.	.
Template Conservation
Template Sequence		D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N
Template Known Secondary structure					S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T	T	T	T		S	S	S	S													S							G	G	G							T
Template Predicted Secondary structure
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.													.	.	.	250	.	.	.	.	.	.		.	.
Predicted Secondary structure																																											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.
Query SS confidence																																											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.
Query Sequence		G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	.	.	.	D	G	D	N	T	L	S	A	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	D	F	F	N	E	M	N	E	D	G	.	T	L
Query Conservation																																											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.
Alig confidence																																											.	.	.												.	.	.	.	.	.	.	.	.	.	.	.											.
Template Conservation
Template Sequence		G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	L	K	I	L	K	D	D	K	R	F	F	P	P	Y	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E	L	E	G	V	I	N	K	L	I	G	Q	I	D	T	E	T	M	Q	E	L	N	Y	E	V	D	G	K	L	K	E	P
Template Known Secondary structure		T	S		S						T	T		T					T	T					B		T	T			S				B													S	T	T							T	T	T	T																T	S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	I	E	E	K	Y	L	G	H	G	D	D	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	V	A	K	E	F	L	E	K	H	H	Y	F	D
Template Known Secondary structure												T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions