Job Description P0AGC5 Confidence 30.25% Date Thu Jan 5 11:28:45 GMT 2012 Rank 221 Aligned Residues 175 % Identity 15% Template c3onmB_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator lrha; PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis Resolution 2.40 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.																									.																											.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.																									.																											.	.	.	.	.	.
Template Sequence		S	L	I	I	G	A	S	D	D	T	A	D	.	.	.	.	.	.	.	.	.	T	L	L	P	F	L	L	N	R	V	A	T	L	Y	P	L	A	I	D	V	R	V	K	R	.	S	P	F	I	A	D	M	L	S	S	G	E	V	D	L	A	I	T	T	A	K	V	D	S	H	P	.	.	.	.	.	.	H	V
Template Known Secondary structure													T	.	.	.	.	.	.	.	.	.	T	T									T	T	S												.	G	G	G							T	T	S		S					S	S			S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.																									.																											.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.										.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.		.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.							.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D
Query Conservation
Alig confidence																		.	.	.	.
Template Conservation																		.	.	.	.
Template Sequence		I	L	R	T	S	P	T	L	W	Y	C	S	V	D	Y	Q	.	.	.	.	F	Q	P	G	E	P	V	P	L	V	V	M	D	E	P	S	L	Y	R	E	M	A	I	E	H	L	T	Q	A	G	V	P	W	R	I	A	Y	V	A	S	S	L	S	A	I	R	A	A	V	R	A	G	L	G	V	T	A	R	P	I
Template Known Secondary structure														T	T			.	.	.	.			S	S	S								S	S	S														T	T										S	S										T	T	S		B					G
Template Predicted Secondary structure																		.	.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.
Query SS confidence																							.	.	.	.	.
Query Sequence		S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	.	.	.	.	.	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L
Query Conservation																							.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.													.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.
Template Sequence		E	M	.	.	.	.	.	.	.	M	S	P	D	L	R	V	L	G	E	T	E	G	L	P	G	L	P	E	T	R	Y	V	L	C	K	D	K	Q	C	D	N	E	L	A	L	A	I
Template Known Secondary structure		G	G	.	.	.	.	.	.	.			T	T						G	G	G	T															S
Template Predicted Secondary structure				.	.	.	.	.	.	.
Template SS confidence
		241	.								.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions