Job Description P0AGC5 Confidence 93.46% Date Thu Jan 5 11:28:45 GMT 2012 Rank 131 Aligned Residues 195 % Identity 10% Template c3o66A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter; PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter Resolution 1.86 Å

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		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																								.	.	.	.	.																																		.	.	.	.
Query SS confidence																																								.	.	.	.	.																																		.	.	.	.
Query Sequence		R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	.	.	.	.	.	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	.	.	.	.
Query Conservation																																								.	.	.	.	.																																		.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.																.	.	.	.	.									.																									.	.	.	.
Template Conservation																.	.	.	.	.	.	.	.	.																													.
Template Sequence		K	N	D	V	K	I	T	A	L	S	T	S	E	S	.	.	.	.	.	.	.	.	.	Q	I	I	S	H	X	L	R	L	L	I	E	H	D	T	H	G	K	I	K	P	T	L	V	N	N	L	G	.	S	S	T	I	Q	H	N	A	L	I	N	G	D	A	N	I	S	G	V	R	Y	N	G	T	D	L	T	G
Template Known Secondary structure											S	S				.	.	.	.	.	.	.	.	.															T	T	T	S										S	.	S											T	S		S													T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																													.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.										.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																							113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.				140	.	.	.	.	.	.	.					.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.									.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.									.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	.	.	.	R	P	R	T	L	G	N	L	.	.	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.									.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.									.	.	.	.
Template Conservation
Template Sequence		A	L	K	E	A	P	I	K	D	P	K	K	A	X	I	A	T	Q	Q	G	F	K	K	K	F	D	Q	T	F	F	D	S	Y	G	F	A	N	T	Y	A	F	X	V	T	K	E	T	A	K	K	Y	H	L	E	T	V	S	D	L	A	K	H	S	K	D	L	R	L	G	X	D	S	S	W	X	N	G	D	G	Y
Template Known Secondary structure		T	T							S																	S								S		B																T		S	B	S	G	G	G	T	T	T	G	G	G							G	G	G					S
Template Predicted Secondary structure
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.				.	.	.	.	240	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	.	.	.	D	G	D	N	T	L
Query Conservation																																																																									.	.	.
Alig confidence									.	.																																																															.	.	.
Template Conservation									.	.
Template Sequence		E	G	F	K	K	E	Y	.	.	G	F	D	F	G	T	V	R	P	X	Q	I	G	L	V	Y	D	A	L	N	T	E	K	L	D	V	A	L	G	Y	S	T	D	G	R	I	A	A	Y	D	L	K	V	L	K	D	D	K	Q	F	F	P	P	Y	A	A	S	A	V	A	T	N	E	L	L	R	Q	H	P	E	L
Template Known Secondary structure									.	.					S							G	G	G							T	T	S		S						T	T							T	T					B		T	T			S				B														T
Template Predicted Secondary structure									.	.
Template SS confidence
		184	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
		242	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	A	L	L	D	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	T	I	N	K	L
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		262	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions