Job Description P0AGC5 Confidence 100.00% Date Thu Jan 5 11:28:45 GMT 2012 Rank 12 Aligned Residues 214 % Identity 18% Template c3kzgB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila Resolution 2.06 Å

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		44	.	.	.	.	.			50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure								.	.									.
Query SS confidence								.	.									.
Query Sequence		E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	.	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q
Query Conservation								.	.									.
Alig confidence								.	.									.																																.
Template Conservation																																																		.
Template Sequence		N	L	T	I	G	T	S	K	F	N	P	P	F	E	V	W	S	G	N	N	S	S	L	Y	G	F	D	I	D	L	X	Q	E	I	C	R	R	L	H	A	T	C	T	F	E	A	Y	I	.	F	D	D	L	F	P	A	L	K	N	R	E	V	D	L	V	I	A	S	X	I	I	T	D	E	R	K	K	H	F	I
Template Known Secondary structure									S			T	T	T						T	T	S				S														T										.	G	G	G							T	T	S	S	S				S	S		B							T	T
Template Predicted Secondary structure																																																		.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T
Query Conservation
Alig confidence																					.																														.	.	.	.	.	.
Template Conservation																					.																														.	.	.	.	.	.
Template Sequence		F	S	L	P	Y	X	E	S	N	S	Q	Y	I	T	T	V	D	S	K	.	I	S	T	F	D	D	L	H	G	K	K	I	G	V	R	K	G	T	P	Y	A	R	Q	V	L	S	E	N	R	.	.	.	.	.	.	N	N	Q	V	I	F	Y	E	L	I	Q	D	X	L	L	G	L	S	N	N	Q	V	D	A	S
Template Known Secondary structure						S	B										T	T		S	.			S	G	G	G	G	T	T							T	T	S	T								T		S	.	.	.	.	.	.								S	S										T	T	S	S	S
Template Predicted Secondary structure																					.																														.	.	.	.	.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.							.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.										.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.
Query Sequence		I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	.	.	.	.	.	.	.	.	.	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L
Query Conservation																		.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																				.
Template Conservation																																														.
Template Sequence		L	X	D	Y	E	A	A	K	Y	W	X	A	S	E	P	Y	A	Y	K	L	I	G	K	K	Y	K	L	I	G	K	K	I	S	I	G	E	G	Y	S	I	X	A	N	P	.	D	Q	F	V	L	I	K	K	I	N	K	I	L	L	E	X	E	A	D	G	T	Y	L	R	L	Y	S	E	Y	F
Template Known Secondary structure											T	T	S	S	S		S	S		T	T	T			S											T	T		B						G	.	G	G																		T
Template Predicted Secondary structure																																														.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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