Job Description P0AGC5 Confidence 97.01% Date Thu Jan 5 11:28:45 GMT 2012 Rank 93 Aligned Residues 209 % Identity 12% Template c3kn3C_ PDB info PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes Resolution 2.41 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.																										.
Template Conservation															.	.	.	.	.	.	.	.																										.
Template Sequence		E	L	R	X	A	T	T	T	S	T	D	N	T	.	.	.	.	.	.	.	.	G	L	L	D	V	L	A	P	A	Y	K	K	D	T	G	V	D	L	K	W	V	A	V	G	T	.	G	N	A	L	K	L	G	E	N	C	D	V	D	V	V	F	V	H	A	P	K	V	E	L	E	Y	V	E	K	G	F	G	I
Template Known Secondary structure															.	.	.	.	.	.	.	.																										.									T	T			S					S											T	T	S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																										.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.									.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40		.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
		124	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.			.	.	150	.	.	.	.	.	.	.	.	.	160	.	.						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure					.	.	.																		.	.	.	.	.	.	.					.	.																.	.	.	.	.
Query SS confidence					.	.	.																		.	.	.	.	.	.	.					.	.																.	.	.	.	.
Query Sequence		T	Y	Y	.	.	.	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	.	.	.	.	.	.	.	L	G	N	L	.	.	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	.	.	.	.	.	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A
Query Conservation					.	.	.																		.	.	.	.	.	.	.					.	.																.	.	.	.	.
Alig confidence					.	.	.																		.	.	.	.	.	.	.					.	.																.	.	.	.	.
Template Conservation
Template Sequence		D	R	T	P	V	X	Y	N	D	F	V	I	I	G	N	P	S	F	K	Q	K	F	T	G	X	S	V	A	E	A	F	K	L	I	E	K	E	Q	V	K	F	V	S	R	G	D	K	S	G	T	H	S	K	E	R	E	V	W	K	E	A	L	G	K	I	P	E	K	E	S	W	Y	I	E	A	G	Q	G	X	L
Template Known Secondary structure																	G	G	G	T	T	T	T	T	T													T	T								S	S	S															S	S			T	T		T	T						S
Template Predicted Secondary structure
Template SS confidence
		74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.										.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	.	.	.	.	.	.	.	.	.	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																																																			.	.	.	.	.	.	.	.	.																				.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		A	T	I	N	I	A	E	E	Q	K	G	L	T	L	T	D	R	G	T	F	I	K	Y	E	S	N	H	K	G	K	P	P	X	V	I	V	L	E	G	D	N	T	L	K	N	F	Y	S	I	X	A	V	N	P	K	R	C	E	K	A	D	Y	K	G	A	K	Q	F	I	D	W	I	V	S	E	K	X	.	.	.
Template Known Secondary structure										T	T		B														T	S		S	S		S									G	G	G											T	T	T		T	T	S													T	S				.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		258	.	260	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	R	I	E	E	K	Y
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	A	E	I	A	N	F
Template Known Secondary structure		.
Template Predicted Secondary structure		.
Template SS confidence
			231	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions