Job Description P0AGC5 Confidence 98.77% Date Thu Jan 5 11:28:45 GMT 2012 Rank 54 Aligned Residues 209 % Identity 11% Template c3k2dA_ PDB info PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus Resolution 2.60 Å

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		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110				.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.
Query SS confidence																																																																									.	.	.
Query Sequence		Q	A	R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	.	.	.	Y	N	S	E	R	V
Query Conservation																																																																									.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.																																															.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.
Template Sequence		M	D	T	S	K	V	K	V	G	V	M	A	G	A	E	A	.	.	.	.	.	.	.	.	.	Q	V	A	E	V	A	A	K	V	A	K	E	K	Y	G	L	D	V	E	L	V	T	F	T	D	Y	V	T	P	N	A	A	L	D	D	G	S	I	D	M	N	A	F	Q	H	K	P	Y	L	D	R	Q	V	E	D
Template Known Secondary structure		S											T	T				.	.	.	.	.	.	.	.	.																								S		T	T	S								T	S		S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.
Template SS confidence
		28	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.										.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																				.
Predicted Secondary structure																																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	.	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Query Conservation																																		.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.									.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		R	D	Y	K	L	T	I	A	G	N	T	F	V	Y	P	I	A	G	Y	S	K	Q	.	.	V	K	S	V	A	A	L	A	D	G	V	R	I	A	V	P	N	D	P	T	N	L	G	R	S	L	L	L	L	E	Q	Q	G	L	I	K	L	R	P	E	V	G	L	L	A	T	V	R	D	I	V	E	N	P	K	N
Template Known Secondary structure																						S	S	.	.		S		S	T	T			T	T								S														T	T	S					T	T			S	S			G	G	G					T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120			.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	.	.	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E
Query Conservation																																																													.	.
Alig confidence													.	.	.																																														.	.															.	.	.	.
Template Conservation													.	.	.																																																														.	.	.	.
Template Sequence		I	T	I	M	E	L	D	A	A	Q	L	.	.	.	P	R	S	L	D	D	V	A	L	S	I	I	N	T	T	Y	A	S	S	I	N	L	T	P	E	K	D	G	V	F	V	E	D	K	E	S	P	Y	V	N	L	I	V	A	R	Q	D	N	V	Q	N	E	N	V	Q	N	F	V	K	A	Y	.	.	.	.	Q
Template Known Secondary structure									G	G	G		.	.	.				T	T	T	S	S										G	G	G	T								S					S	S	S	S									T	T	T	T	T	S											.	.	.	.	T
Template Predicted Secondary structure													.	.	.																																																														.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.				.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.					.
		255	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	T	L	A	R	I	E	E	K	Y	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	E	E	V	Y	T	A	A	K	E	I	F
Template Known Secondary structure		S											T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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