Job Description P0AGC5 Confidence 96.59% Date Thu Jan 5 11:28:45 GMT 2012 Rank 103 Aligned Residues 194 % Identity 12% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		42	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		R	G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	.	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q
Query Conservation																																							.
Alig confidence																.	.	.	.	.	.	.	.	.															.											.
Template Conservation																.	.	.	.	.	.	.	.	.																										.
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	.	.	.	.	.	.	.	.	.	Y	L	L	P	K	L	I	V	S	L	R	R	T	A	P	K	X	P	L	X	L	E	E	N	Y	.	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	A	E	P	F	Q	E	P	G	I	V	T	E	P
Template Known Secondary structure											T	T	T			.	.	.	.	.	.	.	.	.															T	T										.										T	T	S	S	S						S	S				T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.										.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure
Query SS confidence
Query Sequence		P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T
Query Conservation
Alig confidence																																																					.	.	.	.	.	.	.																				.
Template Conservation																																																					.	.	.	.	.	.	.																				.
Template Sequence		L	Y	D	E	P	F	F	V	I	V	P	K	G	H	S	F	E	E	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	T	N	.	.	.	.	.	.	.	T	L	Q	G	S	S	I	N	T	I	R	H	X	V	A	S	G	L	A	.	I	S
Template Known Secondary structure													T	T		G	G	G	G		S	S			S	S	G	G	G	G	S							T	T									T	T				.	.	.	.	.	.	.					S	S										T	T	S		.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.																				.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.
		201	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D
Query Conservation
Alig confidence																																								.	.
Template Conservation																																								.	.
Template Sequence		V	L	P	A	T	A	L	T	E	N	D	H	X	L	F	S	I	I	P	F	E	G	T	P	P	S	R	R	V	V	L	A	Y	R	R	N	F	V	.	.	R	P	K	A	L	S	A	X	K	A	A	I	X	Q	S
Template Known Secondary structure					G	G	G			G	G	G	G	G	T							S	S	S												T	T			.	.														T	S
Template Predicted Secondary structure																																								.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions