Job Description P0AGC5 Confidence 98.92% Date Thu Jan 5 11:28:45 GMT 2012 Rank 50 Aligned Residues 203 % Identity 11% Template c3ix1B_ PDB info PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.				.	.	.	.	.	.	120
Predicted Secondary structure																																																																								.	.	.
Query SS confidence																																																																								.	.	.
Query Sequence		E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	.	.	.	E	R	V	K	N	Y	Q
Query Conservation																																																																								.	.	.
Alig confidence														.	.	.	.	.	.																																																					.	.	.
Template Conservation														.	.	.	.	.	.
Template Sequence		T	V	E	V	M	L	D	W	Y	P	N	A	.	.	.	.	.	.	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K	D	L	P	V	V
Template Known Secondary structure								S	S	S	S		G	.	.	.	.	.	.	G	G									T	T					T	T									S	S	T	T								T	T	S		S															T	T
Template Predicted Secondary structure														.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence		P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	.	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y
Query Conservation																																																.
Alig confidence																																																.																			.	.
Template Conservation																																																																			.	.
Template Sequence		S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	.	.	E	L	G	A	S	I	V	S	G	R	A	D	A
Template Known Secondary structure									S			B						T	T	T			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	T	.	.								T	T	S		S
Template Predicted Secondary structure																																																																			.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.
		200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230					.	.	.	.	.				.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure					.	.																													.	.	.	.						.	.	.
Query SS confidence					.	.																													.	.	.	.						.	.	.
Query Sequence		T	I	A	.	.	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	.	.	.	.	W	F	S	P	L	.	.	.	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E
Query Conservation					.	.																													.	.	.	.						.	.	.
Alig confidence					.	.																													.	.	.	.						.	.	.
Template Conservation
Template Sequence		V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E
Template Known Secondary structure				S		B	T	T	T								T	T								G	G	G	T	T						S
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions