Job Description P0AGC5 Confidence 98.76% Date Thu Jan 5 11:28:45 GMT 2012 Rank 55 Aligned Residues 205 % Identity 9% Template c3ir1F_ PDB info PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis Resolution 2.15 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		G	E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	.	.	.	.	.	E	R	V	K
Query Conservation																																																																									.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.
Template Sequence		K	E	I	V	F	G	T	T	V	G	D	F	G	.	.	.	.	.	.	.	.	.	D	M	V	K	E	Q	I	Q	P	E	L	E	K	K	G	Y	T	V	K	L	V	E	F	T	D	Y	V	R	P	N	L	A	L	A	E	G	E	L	D	I	N	V	F	Q	H	K	P	Y	L	D	D	F	K	K	E	H	N	L
Template Known Secondary structure										S	S				.	.	.	.	.	.	.	.	.						T							T	T	T									S	S	S	S									T	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.
Template SS confidence
		43	.	.	.	.	.	.	50	.	.	.	.	.										.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.																					.	.	.
Predicted Secondary structure																																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	.	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	S
Query Conservation																																	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.									.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		D	I	T	E	V	F	Q	V	P	T	A	P	L	G	L	Y	P	G	K	.	.	.	.	L	K	S	L	E	E	V	K	D	G	S	T	V	S	A	P	N	D	P	S	N	F	A	R	V	L	V	M	L	D	E	L	G	W	I	K	L	K	D	G	I	N	P	L	T	A	S	K	A	D	I	A	E	N	L	K	N
Template Known Secondary structure											B								S	S	.	.	.	.	S		S	T	T	S			T	T								S														T	T	S	S				T	T	S		G	G	G			G	G	G					T	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G
Query Conservation
Alig confidence																	.	.	.																																																								.	.	.	.
Template Conservation																	.	.	.																																																								.	.	.	.
Template Sequence		I	K	I	V	E	L	E	A	A	Q	L	P	R	S	R	.	.	.	A	D	V	D	F	A	V	V	N	G	N	Y	A	I	S	S	G	M	K	L	T	E	A	L	F	Q	E	P	S	F	A	Y	V	N	W	S	A	V	K	T	A	D	K	D	S	Q	W	L	K	D	V	T	E	A	Y	.	.	.	.	N	S	D
Template Known Secondary structure									G	G	G					G	.	.	.	G	G	S	S												T	T			G	G	G		S						S	T	T								G	G	G	T	T											T	.	.	.	.	S	S
Template Predicted Secondary structure																	.	.	.																																																								.	.	.	.
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.				.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.					260	.	.
		257	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	A	R	I	E	E	K	Y	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	F	K	A	Y	A	H	K	R	F	E
Template Known Secondary structure											S	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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