Job Description P0AGC5 Confidence 100.00% Date Thu Jan 5 11:28:45 GMT 2012 Rank 6 Aligned Residues 247 % Identity 17% Template c3hv1A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus Resolution 1.90 Å

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		29	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure																							.	.
Query SS confidence																							.	.
Query Sequence		F	G	K	A	D	N	R	I	A	A	I	Q	A	R	G	E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A
Query Conservation																							.	.
Alig confidence																							.	.																																								.
Template Conservation																																																																.
Template Sequence		F	A	T	Q	K	D	Q	W	Q	T	Y	T	K	E	K	K	I	K	I	G	F	D	A	T	F	V	P	X	G	Y	E	E	K	D	G	S	Y	I	G	F	D	I	D	L	A	N	A	V	F	K	L	Y	G	I	D	V	E	W	Q	A	I	D	.	W	D	X	K	E	T	E	L	K	N	G	T	I	D	L	I	W
Template Known Secondary structure		T	G	G	G	S										T								T			T	T	T					T	T	S																T	T	T										.	G	G	G								T	S		S
Template Predicted Secondary structure																																																																.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.		.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.		.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		A	G	L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	.	E	L	S	W	K	V	D	D	K	K	G	S
Query Conservation																																																																					.
Alig confidence																																			.																																		.
Template Conservation																																			.
Template Sequence		N	G	Y	S	V	T	D	E	R	K	Q	S	A	D	F	T	E	P	Y	X	V	N	E	Q	V	L	V	T	K	K	S	S	G	.	I	D	S	V	A	G	X	A	G	K	T	L	G	A	Q	A	G	S	S	G	Y	D	A	F	N	A	S	P	K	I	L	K	D	V	V	A	N	Q	K	V	V	Q	Y	S	T	F
Template Known Secondary structure		S	S		B							T	T																		G	G	G		.			S	S	G	G	G	T	T							T	T											T	T	T	T	T	T	T	S	G	G	G						S	S
Template Predicted Secondary structure																																			.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.				.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	.	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E
Query Conservation																																.	.	.
Alig confidence																																.	.	.																						.
Template Conservation																																																								.
Template Sequence		T	Q	A	L	I	D	L	N	S	G	R	I	D	G	L	L	I	D	R	V	Y	A	N	Y	Y	L	E	K	S	G	V	L	D	Q	Y	N	V	X	P	A	G	Y	E	G	E	S	F	A	V	G	A	R	K	V	.	D	K	T	L	I	K	K	I	N	Q	G	F	E	T	L	Y	K	N	G	E	F	Q	K	I	S
Template Known Secondary structure											T	S		S																T	T		G	G	G							S	S											T	T	.																			T
Template Predicted Secondary structure																																																								.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	K	Y	L	G	H	G	D	D	F	D	Y	V	D	T	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	W	F	G	E	D	V	A	T	D	Q	V	K	G	K
Template Known Secondary structure						S	S					T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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