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Job DescriptionP0AGC5
Confidence98.99%DateThu Jan 5 11:28:45 GMT 2012
Rank48Aligned Residues196
% Identity12%Templatec3hn0A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   44.....50.........60.........70.........80.........90.........100.........110.........120...
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Query Sequence  ELRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNADLLAAGLVYNSERVKNYQPGP
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Template Sequence  VIKVSVLRGPSVI. . . . . . . . AF. ADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPX. . . . . . INAANLYN
Template Known Secondary structure  SST........T.S

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   25....30....... .. 40.........50.........60.........70.........80. ........
 
   124.....130.........140.........150.........160.........170.........180.........190.........200...
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Query Sequence  TYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIAD
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Template Sequence  KGIKIKLAGCPIWGTLYLVEKTPLKEPALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG
Template Known Secondary structure  TT
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   90.........100.........110.........120.........130.........140.........150.........160.........
 
   204.....210.........220........ .230.........240.........250....
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Query Sequence  SVAISLFQRVHPELAVALDITDEQP. . . . . . . VTWFSPLDGDNTLSAALLDFFNEMNE
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Template Sequence  EPFLSIALRKDSSLRITADLNHLTDNDTLGFAQTAVVYTPTXEKYRIAFEDALRASCQ
Template Known Secondary structure  TT
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   170.........180.........190.........200.........210.........220.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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