Job Description P0AGC5 Confidence 99.97% Date Thu Jan 5 11:28:45 GMT 2012 Rank 22 Aligned Residues 221 % Identity 19% Template c3h7mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of a histidine kinase sensor domain with2 similarity to periplasmic binding proteins Resolution 2.40 Å

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		41	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		A	R	G	E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N
Query Conservation											.	.
Alig confidence											.	.																																								.																			.
Template Conservation																																																				.																			.
Template Sequence		R	H	R	T	I	V	V	G	G	D	R	D	Y	P	P	Y	E	F	I	D	Q	N	G	K	P	A	G	Y	N	V	E	L	T	R	A	I	A	E	V	M	G	M	T	V	E	F	R	L	G	A	.	W	S	E	M	F	S	A	L	K	S	G	R	V	D	V	L	Q	G	.	I	S	W	S	E	K	R	A	R	Q
Template Known Secondary structure		S	S	S								T			T	T	T					T	T	S				S														T										.	G	G	G							T	T	S	S	S					.									T	T
Template Predicted Secondary structure																																																				.																			.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.		.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.		.	.	.	.	.	.	.	.	130	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D
Query Conservation
Alig confidence																																																					.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		I	D	F	T	P	P	H	T	I	V	Y	H	A	I	F	A	R	R	D	S	P	P	A	A	G	L	E	D	L	R	G	R	K	V	A	L	H	R	D	G	I	M	H	E	Y	L	A	E	R	G	Y	.	.	.	.	.	.	G	K	D	L	V	L	T	P	T	P	A	D	A	L	R	L	L	A	A	G	G	C	D
Template Known Secondary structure																			S	S	S				S	S	G	G	G	G	T	T	S						T	T	S								T	T	T		.	.	.	.	.	.	G	G	G					S	S										T	T	S	S	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.							.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																			.	.
Query SS confidence																			.	.
Query Sequence		Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G	H	G	D
Query Conservation																			.	.
Alig confidence																			.	.																						.
Template Conservation																																										.
Template Sequence		Y	A	V	V	A	M	V	P	G	M	Y	I	I	R	E	N	R	L	T	N	L	V	P	V	A	R	S	I	A	A	Q	R	Y	G	Y	A	V	R	Q	G	.	D	A	E	L	L	A	R	F	S	E	G	L	A	I	L	R	K	T	G	Q	Y	E	A	I	R	A	K	W	L	G	V	L	E
Template Known Secondary structure																	T	T		T	T																			T	T	.																			T									S	T	T
Template Predicted Secondary structure																																										.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions