Job Description P0AGC5 Confidence 97.72% Date Thu Jan 5 11:28:45 GMT 2012 Rank 78 Aligned Residues 191 % Identity 16% Template c2zzxD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:abc transporter, solute-binding protein; PDBTitle: crystal structure of a periplasmic substrate binding protein in2 complex with lactate Resolution 1.75 Å

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		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.						90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.
Query SS confidence																																																.	.	.	.	.
Query Sequence		E	L	R	V	S	T	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	V	K	L	K	V	T	V	R	Q	N	.	.	.	.	.	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G	L	V	Y	N	S	E	R	V	K	N
Query Conservation																																																.	.	.	.	.
Alig confidence																.	.	.	.	.	.																											.	.	.	.	.
Template Conservation																.	.	.	.	.	.
Template Sequence		R	W	R	I	Q	T	A	W	D	A	G	T	V	G	.	.	.	.	.	.	Y	S	L	F	Q	K	F	T	E	R	V	K	E	L	T	D	G	Q	L	E	V	Q	P	F	P	A	G	A	V	V	G	T	F	D	M	F	D	A	V	K	T	G	V	L	D	G	M	N	P	F	T	L	Y	W	A	G	R	M	P	V
Template Known Secondary structure								S	S		T	T	S			.	.	.	.	.	.															T	T	T	S								T	T	S	S	S		G	G	G								T	S	S	S					B	G	G	G	G	T	T	T		G	G
Template Predicted Secondary structure																.	.	.	.	.	.
Template SS confidence
		3035	.	.	.	.	3040	.	.	.	.	.	.	.	.							.	3050	.	.	.	.	.	.	.	.	.	3060	.	.	.	.	.	.	.	.	.	3070	.	.	.	.	.	.	.	.	.	3080	.	.	.	.	.	.	.	.	.	3090	.	.	.	.	.	.	.	.	.	3100	.	.	.	.	.	.	.	.
		119	120		.	.	.	.	.	.	.	.	.	130																																					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	Q	.	P	G	P	T	Y	Y	S	V	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V
Query Conservation				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.							.	.																	.
Template Conservation																																																									.	.																	.
Template Sequence		T	A	F	L	S	S	Y	A	L	G	L	D	R	P	D	Q	W	E	T	W	F	Y	S	L	G	G	L	D	I	A	R	R	A	F	A	E	Q	G	L	F	Y	V	G	P	V	Q	H	D	L	N	I	I	H	S	K	.	.	K	P	I	R	R	F	E	D	F	K	G	V	K	L	R	V	.	P	G	G	M	I	A
Template Known Secondary structure		G	G	G	S	S			T	T	S			S										T	S	S											T	T	T																	S	.	.	S				S	G	G	G	G	T	T						.		S
Template Predicted Secondary structure																																																									.	.																	.
Template SS confidence
		3109	3110	.	.	.	.	.	.	.	.	.	3120	.	.	.	.	.	.	.	.	.	3130	.	.	.	.	.	.	.	.	.	3140	.	.	.	.	.	.	.	.	.	3150	.	.	.	.	.	.	.	.	.	3160	.	.	.			.	.	.	.	.	.	3170	.	.	.	.	.	.	.	.	.		3180	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.									.	.	.	230	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L	M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	E	L	A	V	A	L	D	I	T	D	E	.	.	.	.	.	.	.	.	Q	P	V	T	W	F	S
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.																																																	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.
Template Sequence		E	V	F	A	A	A	G	A	.	.	.	.	.	.	.	.	.	S	T	V	L	L	P	G	G	E	V	Y	P	A	L	E	R	G	V	I	D	A	A	D	F	V	G	P	A	V	N	Y	N	L	G	F	H	Q	V	A	K	Y	I	I	M	G	P	P	E	T	P	A	I	H	Q	P	V	D	L	M	D	F	T	I
Template Known Secondary structure							T	T		.	.	.	.	.	.	.	.	.							G	G	G							T	T	S		S					S								T	T													T	T	S	S		S	S		S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.
Template SS confidence
		3186	.	.	.	3190	.	.	.										.	.	.	.	.	.	3200	.	.	.	.	.	.	.	.	.	3210	.	.	.	.	.	.	.	.	.	3220	.	.	.	.	.	.	.	.	.	3230	.	.	.	.	.	.	.	.	.	3240	.	.	.	.	.	.	.	.	.	3250	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	N	R	W	R	S	L	P	K	P	L	Q	E	R	F	I	A	A
Template Known Secondary structure									S
Template Predicted Secondary structure
Template SS confidence
		3257	.	.	3260	.	.	.	.	.	.	.	.	.	3270	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions