Job Description P0AGC5 Confidence 99.96% Date Thu Jan 5 11:28:45 GMT 2012 Rank 31 Aligned Residues 225 % Identity 21% Template c2yjpB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:putative abc transporter, periplasmic binding protein, PDBTitle: crystal structure of the solute receptors for l-cysteine of2 neisseria gonorrhoeae Resolution 2.26 Å

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		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.				80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.																															.	.	.
Query SS confidence																		.	.																															.	.	.
Query Sequence		N	R	I	A	A	I	Q	A	R	G	E	L	R	V	S	T	.	.	I	H	T	P	L	T	Y	N	E	I	N	G	K	P	F	G	L	D	Y	E	L	A	K	Q	F	A	D	Y	L	G	.	.	.	V	K	L	K	V	T	V	R	Q	N	I	S	Q	L	F	D	D	L	D	N	G	N	A	D	L	L	A	A	G
Query Conservation																		.	.																															.	.	.
Alig confidence																		.	.																															.	.	.										.
Template Conservation																																																														.
Template Sequence		A	T	V	A	A	I	K	E	K	G	V	I	R	I	G	V	F	G	D	K	P	P	F	G	Y	V	D	A	N	G	K	N	Q	G	F	D	V	E	I	A	K	D	L	A	K	D	L	L	G	S	P	D	K	V	E	F	V	L	T	E	.	A	A	N	R	V	E	Y	V	R	S	G	K	V	D	L	I	L	A	N
Template Known Secondary structure											T								S			T	T	T					T	T	S				S															S	S	G	G	G								.	G	G	G							T	T	S		S				S	S
Template Predicted Secondary structure																																																														.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	Y	N	S	E	R	V	K	N	Y	Q	P	G	P	T	Y	Y	S	V	S	Q	Q	L	V	Y	K	V	G	Q	Y	R	P	R	T	L	G	N	L	T	A	E	Q	L	T	V	A	P	G	H	V	V	V	N	D	L	Q	T	L	K	E	T	K	F	P	E	L	S	W	K	V	D	D	K	K	G	S	A	E	L
Query Conservation
Alig confidence																																	.																														.	.	.	.	.	.
Template Conservation																																	.																														.	.	.	.	.	.
Template Sequence		F	T	Q	T	P	E	R	A	E	A	V	D	F	A	D	P	Y	M	K	V	A	L	G	V	V	S	P	K	N	K	P	.	I	T	D	M	A	Q	L	K	D	Q	T	L	L	V	N	K	G	T	T	A	D	A	F	F	T	K	S	H	P	.	.	.	.	.	.	E	V	K	L	L	K	F	D	Q	N	T	E	T
Template Known Secondary structure			B			T	T	G	G	G	T					S													T	T	S		.			S	G	G	G	T	T	T	S						T	T	S											T	.	.	.	.	.	.	T	S						S	S
Template Predicted Secondary structure																																	.																														.	.	.	.	.	.
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.		.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		M	E	D	V	I	E	G	K	L	D	Y	T	I	A	D	S	V	A	I	S	L	F	Q	R	V	H	P	.	E	L	A	V	A	L	D	I	T	D	E	Q	P	V	T	W	F	S	P	L	D	G	D	N	T	L	S	A	A	L	L	D	F	F	N	E	M	N	E	D	G	T	L	A	R	I	E	E	K	Y	L	G
Query Conservation																													.
Alig confidence																													.																						.
Template Conservation																																																			.
Template Sequence		F	D	A	L	K	D	G	R	G	V	A	L	A	H	D	N	A	L	L	W	A	W	A	K	E	N	P	N	F	E	V	A	I	G	N	L	G	P	A	E	F	I	A	P	A	V	Q	K	G	.	N	A	D	L	L	N	W	V	N	G	E	I	A	A	M	K	K	D	G	R	L	K	A	A	Y	E	K	T	L	L
Template Known Secondary structure							T	T	S	S	S																	T	T								S	S	S										T	T	.																			S										T
Template Predicted Secondary structure																																																			.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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